Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0962 ATGCCATCCTTAACCCTTGTTGTGGTGTTACTAATACTGATATTCTCGTACAATGTAGATGGTGATGTTGAACATCAAGAGTCATGTTCAAGAAGGTGCGGTGTTCATAGCATCAGCCACCCTTTCCGATTGAAAGACAGTCCTGAAAAGTGTGGTGACAAAAGGTACATCCTATCATGTGAGGACAATAACCAATTGATTTTGTACTATGAATTTGAAGAATACCATGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACCATACGACTATTGGATTTCAATCTTGCTTCTTCTAATAATTCCATCCCTTCTTATTATTCTTTAGGGCTTTATAATTTCAGTTCTAATTTCTTCACCTCACCCTACCTAGCCTATCATCGATACAAAAACTACACTAATCATATGTTGACGAAATCTATGTTATATGTGAGCTGTCCGAATCGGATGGAATATTCATACATTGGTAATTGTATGAATAGAACTTCATATTCACAGGATGTGAATTCTTTCTATGTTGGTGGCTATGGTAAATCTCTGTTGGAATTTGGGTTGGGAGACGGGTGTCATATAGAGTTTATGTATCTCACTTGGGATGTTGAAGATGATGGCAACATCAACAACATTTCTTGTACAGACATTCGTCGTAGGATGTATTATGGATTTGAACTTTCTTGGCTCAACAGTCGGTGTAAACATGGTCGGTATGCAGTGCTCGATCAATATAACCAGCCTCACTGTAAATATGATTACTGGAATAACGCGGCTTGGATAGTTGCACGTTTATCATTCGGCTTAGGTGTATTGGTTGGTTTGCTTAGCGGTGTTAAATTTGTTCTTGGATTGCCATTTATCATTGTATTATTAATCAAAAAATGGCGAAAGAAACATCAATCTATGTATGATGGCGTCGAAGATTTTCTAAGTAGTGATAATAGCATCATCCCTATAAGGTACTCTTACAAAGAGATAAAAAAGATAACCGGAAATTTCATGACAAAACTAGGCAATGGAGGTTATGGATCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTCAAATTATTGGACAGTGCCAAGTCCAACGATCGAGATTTTGTCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTTAATGTGGTACAACTCATTGGTTTCTGTGTGGAAGGTTCAAAACGTGTTCTGATATATGAATTTATGCCAAATGGATCACTAGAAAAATACATATTTTCTCATACCGAAGAGAATTATTCCTTGAGTTGCGAACAATTGTATTCAATTTCACTTGGAGTGGCTCGTGGCATTGAGTACTTGCACAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAAAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCTAGACTTTGTCCTACAGATAAAAGCATTGTGTCATTAACTGCAGCAAGAGGAACCATTGGATACATGGCCCCTGAACTATTCTACCGAAATGTCGGCACGATATCTTACAAAGCTGATGTTTATAGTTTTGGGATGTTGTTAATGGAGATGGCAAATAGAAGGAAGAACTTGGATGTATTGGCTGGTCAATCTAGCCAGGTTTATTTCCCTTTTTGGGTTTATGATCAGTTACAAGATGGAAGAGAAATAACAATTGAGAATGCTACAAATCATGAGATGAAATTGGCAAAGAAAATGATGATAGTGGCTTTGTGGTGTATTCAAGCGAAACCTAGTGATCGTCCTCCAATGGATAAAGTGTTGGAGATGCTTGAAGAAGAAGATGAAGATTTGCAAATGCCTAATCAGCCTGACCTTGATGCACAAGACGTACGAGATGATAGAACTGGTAGTTCATTGTATTCCTCTGGTACATTAGTAACTGATTCCAAGGAACCAATTTGA 1938 0.372 MPSLTLVVVLLILIFSYNVDGDVEHQESCSRRCGVHSISHPFRLKDSPEKCGDKRYILSCEDNNQLILYYEFEEYHGKYYVQSINYNNFTIRLLDFNLASSNNSIPSYYSLGLYNFSSNFFTSPYLAYHRYKNYTNHMLTKSMLYVSCPNRMEYSYIGNCMNRTSYSQDVNSFYVGGYGKSLLEFGLGDGCHIEFMYLTWDVEDDGNINNISCTDIRRRMYYGFELSWLNSRCKHGRYAVLDQYNQPHCKYDYWNNAAWIVARLSFGLGVLVGLLSGVKFVLGLPFIIVLLIKKWRKKHQSMYDGVEDFLSSDNSIIPIRYSYKEIKKITGNFMTKLGNGGYGSVFKGQLRSGRLVAVKLLDSAKSNDRDFVNEVATIGRIHHVNVVQLIGFCVEGSKRVLIYEFMPNGSLEKYIFSHTEENYSLSCEQLYSISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMANRRKNLDVLAGQSSQVYFPFWVYDQLQDGREITIENATNHEMKLAKKMMIVALWCIQAKPSDRPPMDKVLEMLEEEDEDLQMPNQPDLDAQDVRDDRTGSSLYSSGTLVTDSKEPI* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0962 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Mtr1g0962 645 ProSiteProfiles Protein kinase domain profile. 331 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0962 645 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Mtr1g0962 645 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 274 626 - -
Mtr1g0962 645 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 5 235 - -
Mtr1g0962 645 SMART serkin_6 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0962 645 MobiDBLite consensus disorder prediction 600 645 - -
Mtr1g0962 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 274 626 IPR045874 GO:0004672
Mtr1g0962 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 235 IPR045874 GO:0004672
Mtr1g0962 645 Gene3D Phosphorylase Kinase; domain 1 294 405 - -
Mtr1g0962 645 SUPERFAMILY Protein kinase-like (PK-like) 311 603 IPR011009 -
Mtr1g0962 645 Gene3D Transferase(Phosphotransferase) domain 1 406 616 - -
Mtr1g0962 645 Pfam Protein kinase domain 334 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0962 645 MobiDBLite consensus disorder prediction 626 645 - -
Mtr1g0962 645 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0962 Mtr-Chr1 11105100 11107772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0962 3 617 Receptor kinase-like Gene Family AT5G38260 34.069 4.15e-104 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0962 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0962 - - aip:107605930 678.707