Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0959 ATGAACACTCATTATGTTATGGCTTTATTTTTGTTCATGGTTTACTTTGTTGTTAGAACAACTACAGCCATGGTCAATGATTCTCCAGATTTAAGATGTGGAAATCAAGTTATTATCAAATTCCCTTTCCATATCAAAAACCAAAATCCAAATCCATCTTTGTATGGCTATCCAGATTTTGAGTTATTTTGTTCATCAAATAATGAAACTATGATTGAACTTCCTTACAAAGTGAAACTCAATGTTAAGAACATTGACTACAAACACCAAACCATTGAACTATTTGACCCACAAAGTTGTCTTTACAAACATATCCACAACCTCAATCTTTCAGAATCTCATTTCAACTACGTGAAATATGACTATGAAGATTTTGTCGACCATCACTTTTTCAATTGTTCGCTTTTGAATAGAGATGACATAAATTCTTATTTGGTTCCGTGTTTAAGTACATCAACCTCTCAAATATACGTTATCCTCTCTTCTGAATCAATCGACTACCTCCCTCTTTCTTTTTGCACCAAAATGTTTAATGTTTCATTAATCAGCATTTCTCGTTCTGTTCCAAACCAAAAGTTTCTTCGTTTGATGTGGTCTGAGCCTAATTGCAAACATTGTGAATCAAAAGGAAACAGATGTGGCTGGAAGAATACTACTAGTACTACCAACAAGGAAGTAGATTGCTTCGCCAAAAACCACAAAGGTTCATCAACGACGCTAGTCAACACAGGTTCATCAACGGCTCTAGTCAACACAGGATCAATTCTAGGATCGCTGTTTTTTGTCTTGTTAACCGGTGCAGTCTACCACGTTTATGACTCTTACATACTGAACAAAGCAAAACAAGCAATTATAGAAAAGTTTTTAGAAGATTATAGAGCTCTTAAACCCACGAGATACTCTTATGTAGAAATTAAGAGAATCACAAATAACTTTAGTGACAAGTTAGGACAAGGTGCCTATGGAACTGTATATAGAGGAAGCATTTCAAAAGAAATCATTGTTGCTGTGAAGATACTAAATTTTTCTCAAGGAAACGGGCAAGATTTCCTCAATGAAGTTGGTACAATTGGTAGAACCCATCATGTTAATATTGTTAGATTGGTCGGTTTCTGTGCTGATGGATTTAAAAGAGCTCTTATTTATGAATTTTTACCAAATGGTTCCCTGCAGAAGTTCATAAATTCACCAGAAAACAAGAAAAACTTCCTTGGTTGGAAAAAGTTGCATGAAATTGCTTTAGGTATAGCTAAAGGAGTTGAGTATCTTCATCAAGGTTGTGATCAACGCATCCTTCATTTTGATATCAAACCACAAAATGTGTTACTTGACCATAACTTCATTCCAAAAATATCTGACTTTGGTCTAGCTAAATTATGTTCAAGGGACCAAAGCGTAGTTTCAATGACCGCAGCTAGAGGAACATTGGGGTACATTGCTCCAGAAGTTTTTTCAAGGAACTTTGGAAATGTGTCTTACAAATCAGATGTTTATAGTTATGGAATGATGTTGCTTGAAACAATAGGAGGGAAGAAAATCACAGAGGATTTAGAGGAAAACAGTAGTCATGTTTACTATCCGGAATGGATTTATAAACTTATAGATGATGAAGAGGAAATGAGAATTCATGTTGACGATGAAGGGGATGAAAAAGTTGCAAGGAAAATGGCCATTGTGGGACTATGGTGCATTCAGTGGCATGCTATGGATCGACCAACAATGCAAATGGTGGTTCAGATGTTGGAGGGAGATGTAGACAAAACTCCAATACCTCCCAATCCATTTGCTTCTCAATCTAGACAACCTAGGAGAAATGGTGGAGTTGCAATTACTAGACAACTCACTCAAGAGTTAGATGTAATTCAAGAGTTGGAATGA 1878 0.3584 MNTHYVMALFLFMVYFVVRTTTAMVNDSPDLRCGNQVIIKFPFHIKNQNPNPSLYGYPDFELFCSSNNETMIELPYKVKLNVKNIDYKHQTIELFDPQSCLYKHIHNLNLSESHFNYVKYDYEDFVDHHFFNCSLLNRDDINSYLVPCLSTSTSQIYVILSSESIDYLPLSFCTKMFNVSLISISRSVPNQKFLRLMWSEPNCKHCESKGNRCGWKNTTSTTNKEVDCFAKNHKGSSTTLVNTGSSTALVNTGSILGSLFFVLLTGAVYHVYDSYILNKAKQAIIEKFLEDYRALKPTRYSYVEIKRITNNFSDKLGQGAYGTVYRGSISKEIIVAVKILNFSQGNGQDFLNEVGTIGRTHHVNIVRLVGFCADGFKRALIYEFLPNGSLQKFINSPENKKNFLGWKKLHEIALGIAKGVEYLHQGCDQRILHFDIKPQNVLLDHNFIPKISDFGLAKLCSRDQSVVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDLEENSSHVYYPEWIYKLIDDEEEMRIHVDDEGDEKVARKMAIVGLWCIQWHAMDRPTMQMVVQMLEGDVDKTPIPPNPFASQSRQPRRNGGVAITRQLTQELDVIQELE* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0959 625 SMART serkin_6 310 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0959 625 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 624 IPR045874 GO:0004672
Mtr1g0959 625 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Mtr1g0959 625 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0959 625 Gene3D Phosphorylase Kinase; domain 1 285 384 - -
Mtr1g0959 625 SUPERFAMILY Protein kinase-like (PK-like) 294 582 IPR011009 -
Mtr1g0959 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Mtr1g0959 625 PANTHER RECEPTOR-LIKE KINASE 34 624 - -
Mtr1g0959 625 Gene3D Transferase(Phosphotransferase) domain 1 385 589 - -
Mtr1g0959 625 ProSiteProfiles Protein kinase domain profile. 310 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0959 625 Pfam Wall-associated receptor kinase galacturonan-binding 32 96 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0959 Mtr-Chr1 11087766 11092218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0959 1 598 Receptor kinase-like Gene Family AT1G66910 36.111 4.60e-119 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0959 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0959 - - mtr:MTR_1g031540 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0959 1 11087766 11092218 Mtr1g0959 1 11087766 11092218 ECH