Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0958 ATGTATTTTTATTATACGGATCTTATGCATTTAAATTGTGAGTATGAATTTCTAATTGCTATGATAAAAAATTCAAAAATGCTTTCCTTAACGTCCTTTGTTATGGTGGCAGTAGTGTTGCTACTGAGCGACAAAGTGTATGGTGATGAACAACAAGAGTCATGTTCAAGAAGGTGCGGTGTTCATAACATCAGCCACCCTTTCCGATTGAAAGACAGTCCCAAAAAATGTGGTGACAATAGGTACAACCTATCATGTGAGGACAACAATCAATTGATTTTGTACCATGGTTCATTTGGAAAATACTATGTACAATCAATTAATTACAACAACTTTACCATCCAACTATCGTATTTCAATATTCTTTCTAATAACTCCATCCCTCCTAGTGATTTCAGTCCTTTTTTCACCTCAAATATCTACGTACCTTATCTAGAAAAAAACAATTCGTTGAGCAATAGATTGACGAAACTTATGTTGCATGTGAGCTGTCCGAACCAGGCTGGTTACATATACAGAGATAACTGTAGGAATAGTAGTTTGTATTCACGGTACGAGAATTCTTTCTATGTTGATGGCTACTTCAAAACTCTTTCGGAGTTGGGGTTGAGAGATGGATGTCGTATAGAGCTTATGTTTCTCACATCTTGGTCTCCTCAAGATGGCAACAACAATAACATTTCTTGCACGGACATCAACCGTATGATGTCTTATGGATTTGAAGTCTCTTGGCTCAATAGTCTTTGTAAAGATGATTGGCATGCAGAGTTTGATCAAAATAACCACCTTCATTGTCGTCGTCCAGTATTTCGCTTTTCTGGTTGGGAGGTCATAATAGAAGATACCTTGATCTTAGGTGTTTGGGTAACTTCGGTTGGCTTTTTGTTCAGCATTGTTAAATTTGTCCTTGGAGCGCCTTGCATCATTGTATTATTAATCTACAAATGTCGACGGGAACATTTATCTGTGTATGATGGCATTGAAGATTTTCTGAGGAGTGACAATAGCATCATGCCGATAAGGTACTCTTACAAAGACATAAAAAAGATAACAGAACAATTCAAAACAAAATTAGGCAATGGAGGTTATGGAACTGTTTTTAAAGGACAACTACGAAGCGGTTGTCTTGTAGCAGTCAAATTATTGGACAAAGCCAAGTCCAATGGTCAAGATTTCATCAATGAAGTTGTCACCATTGGTAGGATTCACCATGTTAATGTGGTACACCTTATTGGTTTTTGCGTGGAGGGTTCAAAACGTGTTCTTATATATGAATTCATGCCAAATGGGTCACTGGAAAAATACATATTTTCTCATAATGAAGAGAGTAATTCCTTGAGTTGTGAAAAATTGCATGCCATTTCTCTTGGGGTGGCTCGTGGCATTGAGTACTTGCATAATGGATGTGATATGAAAATTCTACACTTTGATATAAAGCCTCATAACATCCTTCTTGATGAAAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCTAGACTTTGTCCTACAGATAAAAGCTTTGTGTCATTAACTGCAGCAAGAGGGACCATTGGATACATGGCTCCTGAACTATTCTACAGAAATGTTGGCACAATATCTTACAAAGCTGATGTATATAGTTTTGGGATGTTGTTGATGGAGATGGCAAGTAGAAGGAGGAACTTGAATGCAATGGCTGAGCAATCTAGCCAAATTTATTTCCCTTTTTGGATATATGATCGATTACATGATGGAAGGGAAGTAACGATTGAAAATGACACAGATCAGGAAATAAAATTGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAACCCGACGACCGTCCTTCAATGGATAAAGTGTTGGAGATGCTTGAAGAAGAAGATGGGGACTTGCAAATTCCTAATAAGCCTTACTTTTGTTTACAAGATCCACCAGTAGAGGATGTTGGAGATGATTATAATAGAAACTCATGGAGTTCGTATGGTACATCAGTTAGTGATTCCAAGGGACCAACCTGA 2016 0.3725 MYFYYTDLMHLNCEYEFLIAMIKNSKMLSLTSFVMVAVVLLLSDKVYGDEQQESCSRRCGVHNISHPFRLKDSPKKCGDNRYNLSCEDNNQLILYHGSFGKYYVQSINYNNFTIQLSYFNILSNNSIPPSDFSPFFTSNIYVPYLEKNNSLSNRLTKLMLHVSCPNQAGYIYRDNCRNSSLYSRYENSFYVDGYFKTLSELGLRDGCRIELMFLTSWSPQDGNNNNISCTDINRMMSYGFEVSWLNSLCKDDWHAEFDQNNHLHCRRPVFRFSGWEVIIEDTLILGVWVTSVGFLFSIVKFVLGAPCIIVLLIYKCRREHLSVYDGIEDFLRSDNSIMPIRYSYKDIKKITEQFKTKLGNGGYGTVFKGQLRSGCLVAVKLLDKAKSNGQDFINEVVTIGRIHHVNVVHLIGFCVEGSKRVLIYEFMPNGSLEKYIFSHNEESNSLSCEKLHAISLGVARGIEYLHNGCDMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSFVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRRNLNAMAEQSSQIYFPFWIYDRLHDGREVTIENDTDQEIKLAKKMMIVALWCIQTKPDDRPSMDKVLEMLEEEDGDLQIPNKPYFCLQDPPVEDVGDDYNRNSWSSYGTSVSDSKGPT* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0958 671 Gene3D Phosphorylase Kinase; domain 1 331 426 - -
Mtr1g0958 671 Pfam Wall-associated receptor kinase galacturonan-binding 55 116 IPR025287 GO:0030247
Mtr1g0958 671 Gene3D Transferase(Phosphotransferase) domain 1 427 632 - -
Mtr1g0958 671 ProSiteProfiles Protein kinase domain profile. 352 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0958 671 MobiDBLite consensus disorder prediction 652 671 - -
Mtr1g0958 671 SMART serkin_6 352 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0958 671 SUPERFAMILY Protein kinase-like (PK-like) 333 624 IPR011009 -
Mtr1g0958 671 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Mtr1g0958 671 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 292 648 - -
Mtr1g0958 671 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 30 252 - -
Mtr1g0958 671 MobiDBLite consensus disorder prediction 643 671 - -
Mtr1g0958 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Mtr1g0958 671 PANTHER RUST RESISTANCE KINASE LR10-RELATED 292 648 IPR045874 GO:0004672
Mtr1g0958 671 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 252 IPR045874 GO:0004672
Mtr1g0958 671 Pfam Protein kinase domain 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0958 Mtr-Chr1 11076815 11086707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0958 33 656 Receptor kinase-like Gene Family AT5G38260 35.439 6.69e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0958 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0958 - - mtr:MTR_1g031450 921.768