Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0909 ATGTCGTCCTCTACTGAATCCTATTTTATCTATATTGAGGAATCCCAAAACACTATCCCACAAAGTTTTTCTCCACATGAATGTTTCCTCATTAAACTTCACCACTTTCACTCGACTTCATTCAACCACTATGACTTCCTTATTCCTGGTAACATCTTATGTGATTACGATGAGTTTGAATCCGTGGATCAAGATAGTTTATCCTATACCTTTTTGCGTAACACTTTCTTGTCGGTGGATCTTCCTCATGAAGTGTTGGAAGAAACCCTACTTCTTATGGGTGAGTACGCTAGGTATATGAACACAGTCAACTTTGAAGGATATAGAATATTGGAGATGGATGTGTTTGTTGACACAACATCAAATATTAGTGATGATGAGAATGCTATTGCGTCCCTTTCCAAGATGTTGGAGAAGCTTAAAGTGAAAGATGTTGATACTTCTTTTTGTTCAAGAGAACAATGTTCAATTTGTTTGGAGGAATTTTGTGATGGATCAGAAGTACCACACATTATTCGTACCAAGTGTATGCATTTTTTTCATGAACATTGTGTTGCTCGGTGGCTTAAACAATGTAGCTTTCACAATCGTTTATATTCTTGTCCAGTGTGTCGTTCTCAAATTCAATGA 630 0.3667 MSSSTESYFIYIEESQNTIPQSFSPHECFLIKLHHFHSTSFNHYDFLIPGNILCDYDEFESVDQDSLSYTFLRNTFLSVDLPHEVLEETLLLMGEYARYMNTVNFEGYRILEMDVFVDTTSNISDDENAIASLSKMLEKLKVKDVDTSFCSREQCSICLEEFCDGSEVPHIIRTKCMHFFHEHCVARWLKQCSFHNRLYSCPVCRSQIQ* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0909 209 ProSiteProfiles Zinc finger RING-type profile. 155 205 IPR001841 -
Mtr1g0909 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 209 IPR013083 -
Mtr1g0909 209 CDD RING-H2 155 205 - -
Mtr1g0909 209 PANTHER RING ZINC FINGER PROTEIN-RELATED 120 208 - -
Mtr1g0909 209 SMART ring_2 155 204 IPR001841 -
Mtr1g0909 209 SUPERFAMILY RING/U-box 154 208 - -
Mtr1g0909 209 Pfam Ring finger domain 154 205 IPR001841 -
Mtr1g0909 209 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 120 208 - -
Mtr1g0909 209 Coils Coil 123 143 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0909 137 205 C3H Transcription Factor Family AT5G41430 44.928 5.77e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0909 - K16285 mtr:MTR_1g029910 246.128