Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0908 ATGTTACCTTCTTCACCATCTTCGCAAAAAGGGAATTTGATGATTACTTATAGAGAGCTACATGAAGCAACCAATGGGTTTTCTTCATCCAATTTGGTTGGAACAGGAAGTTTTGGTTCTGTTTACAAAGGATCTCTTCTTAACTTTGAAAAACCCATTGTTGTAAAGGTATTGAATCTTAAAACATGTGGAGGAGCAAAGAGTTTCAAAGCAGAACGCGAAGCTCTAGGAAAGATGAAACACCGAAACCTTGTCAAGATCCTAACTTGTTGTTCAAGCGTTGATTATAAGGGTGAAGAGTTCAAGGCTATTGTTTTTGAGTTCATGCCTAAGGGGAGTCTAGAAAAGCTTCTGCACGATAAAGAAGGGTCTGGAATTCATAATCTCAGCCTCAGACAAAGGGTTGACATTGCTCTTGATGTAGCTCATGCACTTAATTATCTTCACAATGGTACAGAGCAAGCCATAGTTCACTGTGATATTAAGCCGAGCAACGTTCTTCTGGACGATGACATTGTAGCTCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCTTGGAACCAGAGACCATTCAAGTAAAGATCAAGTTAATTCTTCCACAATCAAGGGAAGTATAGGATATGTTCCTCCTGAATATGGAGCAGGTGTTCCAGTATCTCCCCAGGGAGATGTTTACAGCTTTGGGATTCTCTTGTTAGAGATGCTCACTGGAAAGAGACCAACAGATAACATGTTTAGCCAGAATCTTAGCCTTCACAAATTCTGTAAGATGAAAATTCCTGTAGAAATTCTTGAGATAGTGGATTCACATTTGCTTATGCCATTTCCTAAAGATCAGACACTAATGACGGAAAAAAACATTAAGGAGTGTCTAGTGATGTTTGCTGAAATAGGAGTTGCATGTTCCGAAGAATTCGCTACTCATCGAGTGCTCACAAAAGATGTTATAGTGAAGTTATTTTTACAAAATATGATAATGGGAAGATAA 990 0.3889 MLPSSPSSQKGNLMITYRELHEATNGFSSSNLVGTGSFGSVYKGSLLNFEKPIVVKVLNLKTCGGAKSFKAEREALGKMKHRNLVKILTCCSSVDYKGEEFKAIVFEFMPKGSLEKLLHDKEGSGIHNLSLRQRVDIALDVAHALNYLHNGTEQAIVHCDIKPSNVLLDDDIVAHLGDFGLARLILGTRDHSSKDQVNSSTIKGSIGYVPPEYGAGVPVSPQGDVYSFGILLLEMLTGKRPTDNMFSQNLSLHKFCKMKIPVEILEIVDSHLLMPFPKDQTLMTEKNIKECLVMFAEIGVACSEEFATHRVLTKDVIVKLFLQNMIMGR* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0908 329 Pfam Protein kinase domain 29 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0908 329 Gene3D Transferase(Phosphotransferase) domain 1 109 325 - -
Mtr1g0908 329 ProSiteProfiles Protein kinase domain profile. 27 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0908 329 SMART serkin_6 27 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0908 329 SUPERFAMILY Protein kinase-like (PK-like) 7 324 IPR011009 -
Mtr1g0908 329 Gene3D Phosphorylase Kinase; domain 1 3 108 - -
Mtr1g0908 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Mtr1g0908 329 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 322 - -
Mtr1g0908 329 PANTHER LRR RECEPTOR-LIKE KINASE 2 322 - -
Mtr1g0908 329 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0908 Mtr-Chr1 10498818 10500362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0908 15 320 Receptor kinase-like Gene Family AT3G47570 50.476 1.77e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr1g0908 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0908 - - mtr:MTR_1g029940 502.286