Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0906 ATGCCATCAGCTACTGTTACTCTTGCTTTGAGTTCAGCGATTGATGAGCATGCTTTGCTTGCTTTGAAGGAAAAGCTTACAAATGGTGTACAAGATTCTTTGCCATCATGGAATGAGTCTCTACATTTCTGTGAATGGCAGGGAGTTGAATGCGGTCGTCGACACATGAGAGTTTCTGTCTTGCATTTGGAAAATCAAAACTTGGGTGGTACTCTTGGACCATCCTTGGGAAATCTAACATTTCTTCGAATGCTCAACCTTTCAAATGTCAACTTGCATGGTGAAATTCCAAAACAAGTTGGTCGTTTGAAGCGATTGCAAGTTCTTGACTTAAGATTTAACCATCTTCTTGGAGAGATTCCCATAGAGCTCGCTAACTGCACAAATATCAAGATATTAAGCTTTTCTAGTAACAAATTGAGTGGTGATATTCCCAATCAAACATTTGGCTATCTAGATGGTTTAATATATATTGACTTAGCCAATAATTCCTTGACCGGTCCCATTCCTTCAGAGTTTGGTAACTTGAAGCATCTTTCAGCGTTGTATCTAAACTTGAATAAATTGTCAGGTGAAATTCCTAAATATTTAGCCTCTTGCCTAGATTTGACAGAACTATGGCTGGGTATAAACTTCTTCTACGGAGCTATACCTTTGTTCTTGGGCTCGTCATTAAGGTCCCTCGAAGTCTTAGACCTTTCTGTCAATAATTTCTCAAGCATAATCCCCATTGAACTAGAAAACCTAACATTTTTGAATAATTTGAACTTGTCTTTTAACAATCTCTATGGTGAGGTTCCCACAAGAGGTGTCTTTGGCAATGTCTCAGCAATTTCACTAACTGGAAACAAGAACCTTTGTGGAGGAATACCTCGATTGGAACTTCCTCCATTCCTTAAGAAATCCAAAAAGGTTACCTCTTCTTCACCATTTTTGATAAATGGGAGCTTGAGGGTTACTTATGGATTTTCTTCATCCAATTTGGTAGGTAGAGGAGGATTTGGTTCTGTTTACAAAGGATCTCTTCTCTACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTGAAACACCTGGAGCAGTAAAGAGTTTCGTGGTGGAATGCAAAGCTCTGGGAAACATGAAGCACCGGAATCTTGTTAAGATCCTAACTTGTTGTTCAAGTGTTGATTATAAAGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTCATGCCTAATGGGAGTTTGGAAAACCTTTTGCATGGTAATAAAGAACACGAGTCTAGAAATCTGAATCTCAATTTCACACAAAGGTTAGACATTGTTCTCAACGTAGCTCATGCATTGGATTATCTTCACATTGATGCAGAGCAAGTGGTGGTTCATAGTGGCGTTAAACCAAGCAATGTTCTTCTCGATGATGACAATGTAGCTCACTTAGGAGACTTTGGCTTAGCTAGGCTAATTCGTGGAGCTACAGAACATTCAAGTAAAGATCAAGTTATTTCCTCTACAATTAAGGGAACTATAGGATATGTTCCTCCCGGTAAAGTTCTTTTTATCACTTATTTATTTCTGTCCTTCAAAATGTTTTATATACTTATGCCTTACCTTTACATATCTTACTAA 1611 0.3793 MPSATVTLALSSAIDEHALLALKEKLTNGVQDSLPSWNESLHFCEWQGVECGRRHMRVSVLHLENQNLGGTLGPSLGNLTFLRMLNLSNVNLHGEIPKQVGRLKRLQVLDLRFNHLLGEIPIELANCTNIKILSFSSNKLSGDIPNQTFGYLDGLIYIDLANNSLTGPIPSEFGNLKHLSALYLNLNKLSGEIPKYLASCLDLTELWLGINFFYGAIPLFLGSSLRSLEVLDLSVNNFSSIIPIELENLTFLNNLNLSFNNLYGEVPTRGVFGNVSAISLTGNKNLCGGIPRLELPPFLKKSKKVTSSSPFLINGSLRVTYGFSSSNLVGRGGFGSVYKGSLLYFERPIVVKVLNLETPGAVKSFVVECKALGNMKHRNLVKILTCCSSVDYKGEDFKAIVFEFMPNGSLENLLHGNKEHESRNLNLNFTQRLDIVLNVAHALDYLHIDAEQVVVHSGVKPSNVLLDDDNVAHLGDFGLARLIRGATEHSSKDQVISSTIKGTIGYVPPGKVLFITYLFLSFKMFYILMPYLYISY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0906 536 Pfam Protein kinase domain 325 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0906 536 SMART LRR_typ_2 225 248 IPR003591 -
Mtr1g0906 536 SMART LRR_typ_2 249 274 IPR003591 -
Mtr1g0906 536 SMART LRR_typ_2 103 127 IPR003591 -
Mtr1g0906 536 SMART LRR_typ_2 176 200 IPR003591 -
Mtr1g0906 536 ProSiteProfiles Protein kinase domain profile. 323 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0906 536 Gene3D Transferase(Phosphotransferase) domain 1 316 514 - -
Mtr1g0906 536 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Mtr1g0906 536 SUPERFAMILY Protein kinase-like (PK-like) 306 511 IPR011009 -
Mtr1g0906 536 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 298 510 - -
Mtr1g0906 536 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 126 300 - -
Mtr1g0906 536 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 140 - -
Mtr1g0906 536 Pfam Leucine rich repeat N-terminal domain 15 51 IPR013210 -
Mtr1g0906 536 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Mtr1g0906 536 SUPERFAMILY L domain-like 15 288 - -
Mtr1g0906 536 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Mtr1g0906 536 PANTHER LRR RECEPTOR-LIKE KINASE 298 510 - -
Mtr1g0906 536 PANTHER LRR RECEPTOR-LIKE KINASE 126 300 - -
Mtr1g0906 536 PANTHER LRR RECEPTOR-LIKE KINASE 9 140 - -
Mtr1g0906 536 Gene3D Ribonuclease Inhibitor 12 292 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0906 Mtr-Chr1 10488697 10491373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0906 61 509 Receptor kinase-like Gene Family AT3G47570 40.711 6.32e-107 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr1g0906 Pkinase 1.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0906 - - mtr:MTR_1g029930 763.837