Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0902 ATGTCAAAGTCTCCCTCTCCAGAACAACAGAGATCCATTTATTCTGATTCTAAGCCCATGGAATTCATTGAGGAAACAGGAATGGACGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTTTGGAGCAACTGCATGCCAACATGTCATCAACACTCGAGAAAGAACTTATTACAGCACGATTATTAAGTGTTGCCAAGAGAAGAAAGGATGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCACTTGCAAAAGTTAATGTAGCTTCCACTCTGAGTATCCTGTGTAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCAGTTCTAAAATATGAATCCACTGATGCTAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGTTGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTAAATCCACAGAACAAAGAAGACAAAGTTGTGGAAGGTTTTATTACTGGAGCATTAAGAAATCTATGTGGGGACAAAGATGACTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATTGTGGGTCTCTTGTATTCAGATAATTCTGTTTCTCAGTCAAATGCAGCTTCTCTGTTGGCACGTCTAATGCTGGCTTTTAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAACTTGTTGGTCAGGAAAATTATATTTCTGTACGAGCCAGTGCTGCCGATGCTCTAGAGGCCCTTTCTTCAAAGTCTACTAAGGCTAAAAAGGCTATTGTTGATGCAGATGGCGTTCCAATCCTTATTGGAGCTATTGTTGCTCCTTCTACAGAGTGTATGCGAGGTGATGGCGGTCAGGCCTTGCAAGAGCATGCAACTCGCGCTTTAGCCAACATCTATGGGGGCATGTCTTCTTTAATACTATATCTTGGAGAACTTTCCCATTCTCCTCGCCTTCCCGCCCCAGTTGGCGATATAATTGGTGCTCTTGCTTATACACTCATGGTCTTTGTGGAAAACCTTGATGTTGATGAGGAACATTTTGATGCAACTCAGATAGAGGATAATCTTGTAACTCTTTTAAAGCCCAGAGACAACAAGCTGATTCAAGAGCGTGTCCTTGAGGCTATGGCTAGTCTTTATGGAAACGTCTATCTCTCAAAGTGGCTCATTCAAGCAGATTCGAAGAAGGTTCTCGTTGGTCTTATAACAATGGCTGCTCCTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTGTGTTGTGAAAAGATTGGAATATGGGAGGCCATAAAAAAGCGAGAAGGTATCCAATTGCTGATTTCATTGGTGGGATTAGCCAGTGAGCAGCATCAGGAGTACTCAGTTCAATTGTTAGCGATCTTAACTCACCAGGTTGACGACAGCAAATGGGCAATCACTGCTGCTGGAGGGATTCCACCGTTGGTGCAGTTGTTAGAGACAGGATCGCAAAAAGCAAAAGAGGAAGCAGCTAATGTTCTCTGGAGTTTGTGCTGTCACAGTGAAGATATCCGTGCCTGTGTTGAAAGTGCTGGAGCCGTACCAGCATTTTTGTGGCTTCTCAAGAGTGGTGGACCAAAAGGACAAGAAGCTTCTGCTATGGCACTCACAAAGCTTGTCCGAGTGGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTACTAGGGGATTCTACAAGCTCAAAGGCACATATAATTCGGGTTTTGGGTCACGTGCTTTCTATTGCTTCACAGAAGGATCTCCTTCAGAAGGGATCTGCAGCCAATAACGGACTGAGATCTCTTGTTCAAGTTCTCAATTCATCAAATGTGGAAAACCAAGAATATGCAGCTTCAGTCCTTGCTGATTTATTTATCACTAGACAAGACATGTGTGATAGTCTTGCAACTGATGAGATTGTGCTTCCTTGCCTGAAGCTTTTAACAAGCAAAACTCAAGGTGTTGCCACTCAGTCTGCTCGAGCCCTATGTGCTCTGTCTCGTCCAAACAAGAGCAAAGCTGCAAATAGGATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAACTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCACTAGCTAATCTTCTCTTTGATCCTTCTATTGCCGCTGAAGCTCTAGCCGGAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGATCCTTGGAAGGTAAGCAAAATGCTTCATGTGCACTTTATCAATTACTGAAGCATTTTCCAGTAGGCGACGTTCTCAAGGGGAATGCTCAATGCCGTTTTGCTGTACTTGCACTTGTGGATTCATTAAGAGCTATGGATATGGATGGAACTGATGCAGCAGATACTTTAGGAGCAATTGCACTGCTAATCAGGACTAAACAGGGTGTCGACTTCACTTATCATCCGTGGTTAGCTCTGGTTGAAATACCATCAAACATAGAACTTCTCATTTACTGTTTGGCTGAGGGGCCTCCCCTTGTGCAGGACAAGGCAATCGAAATTCTGTCTAGGCTTTGTGGAGATCAGCCAGCTGTTCTTGGTGATTTGTTATTTGCTAGTTCAAGATCCATTGTGTCATTGGCTAATAGAATTATAAACTCCTCCAGTTCAGAAGTGAAAGTTGGTGGAGCTTCCTTACTAATTTGTGTTGCAAAGGAGAAGAAAGAGCTTTCAGTGGATTCACTTGACTCTTCTGGTTATCTAAAACAACTGATATATTCTTTAGTTGATATGGTGAAGCTGAGTTGTTTCTGTTCTTCATTAGATATTGAAGTATTCACCACTAAAGGTTTTATGGAGAGGAATGCATTTCAAGAAGCTGACGTATTTGATATTCCCGATCCGGCTGTTGTCCTGGGAGGTACTGTTGCACTGTGGTTGCTCTCAATTATTGCTTCTTTCCATTTGAAGAGTAAGCTCACAGTTATGGAAGCTGGTGGACTTGAAGCTCTCTGTAACAAACTTGCAAGACATACTTCAAATCCACAGGCGGAATATGAGGATACCGAAGGAATATGGATCAGTGCCTTGTTCTTGGCCATTTTATTTAAAGATGCAAACATCGTTCTATCACCTGCTACAATGAACATTATACCTTCTATCGCTCTTCTGCTAAGATCCGAAGAAGTAATTGATAAATATTTTGCTGCCCAGGCTTTGGCTAGTCTTGTTTGTAATGGTAATAGGGGGATAAATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGTTTGATAACTATTATTGGGCATATTGAGTCAGATATGCCAAATCTTGTGACATTATCAGAAGAATTTTCCTTGGTGCAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAGATTGGGGTCTACTGCACGGAAATCTATACCCCTCTTAGTGGACCTCTTAAGACCAATACCAGAAAGGCCTAATGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATCGCAGATGGAAGTGATGCAAATAAATCACTTCTGGCAGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGATTCAACTGAGACTGCCATTTCAGAGTTACTGAGAATTTTATTTTTTAACTCTGACCTCATTAAACATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCGAGAAATGCTAGATACAGTGCAGCAAGAGCACTCCATGAACTTTTTGATGCCGACTATATCAGAGATTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAACACAACATCAGGGAGTGAGCAGGAAGCTGCTCTCCTGGCCTTGATCAAGTTAACATCAGGAGATTCGTCAAAAGCATGTGTTTTTACTGATGTGGAAGGGAATCCACTTGAAAGTTTATACAAAATACTGTCTTCTGCTTCTACTTTGGAACTGAAGACCCATGCTGCACATCTCTGCTATGCTCTTTTTGGTAATAGCAAGATCAGAGCAAACCCAGTTGCCTCAGATTGCATAAAACCCCTTATATCACTAATGCAGTCTGGTTATGAGACAGCAATAGAATATGGGGTTTGTGCTTTTGATAGATTGTTGGAAGATGAACAGCAGGTGGAGCTTGCAGCAGCTTATAATGTTGTGGATCTCCTTGTCGGCTTGGTTTCTGGTGAAAACTACCAGCTTATTGAGGCCACTATATCTGTTCTAATTAAATTGGGTAAAGACAGGACTCCTAGCAAACATGACATGGTCAAAGCTGGCATTATTGATAACTGTCTCAAGCTATTTCAATCAGCACCTAGCTCATTATGCTCTACAATAGCTGAGCTTTTTCGCATTTTAACTAATAGTAGTGCAATTGCTAGAAGTTCAGATGCTGCAGAAATTGTAGAACCCCTTTTCAATGTTTTGCTCCGTCGGGATTTCAACATATGGGGACAGCATAGTGCCTTACAAGCACTTGTGAATATATTGGAGAAACCGCAAAGTCTTGCATCCTTAAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATATCTTTTCTGGAATCCCCATCCCAAGATATTCAGCAGCTTGGCACGGAACTGTTATCTCACCTTCTTGCACAGGAACACTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACGGCTTGCAGGAATTGGAATTTTAAATTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATATCCACAAGCTGGCCAAAGGCCGTTGCTGATGCAGGAGGTATTTTCGAGCTTGCAAAAGTTATCATTCAAGATGATCCTCAGCCACCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACGTTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGATAGTACCATTAGCCTAGCGCTAAATGCTTTAGCAGTTTTTGAAAGAAGCTATGGTTCAAGTGCTGAAGAGATGATGGAAGCTGGAGCTATGGATGCTCTGCTGCACCTTATAAGATCTCATCAATGTGAAGAAGCATCTGCTGGATTACTTGAAACTTTATTTAACAATGTCAGAGTACGGGAGATGAAGGTATCTAAGTATGCTATAGCGCCTTTATCCCAATATCTGTTAGATCCACTAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTGGGAAATCTTTCCCAGCATGAACGACATGCTAGAGCCAGTGACTCTGTATCTGCATGTCGTGCATTGATAAGTATACTTGAAGATCAGCCAACTGAAGAAATGACAATGGTGGCTATATGCGCATTACAAAACTTTGTCATGAACAGCAGGACAAATAGACGTGCTGTTGCAGAAGCTGGGGGCATACTAGTGATTCAGGAATTGCTGCTGTTTCCAAATACAGAAGTTGCTGGACAAGCAGCTCTATTAATCAAATTTTTGTTTTCTACTCACACATTACTAGAATATGTGTCAAATGAGCTGATCAGATCTTTGACAGCTGCACTCGAAAGGGAGTTGTGGTCGACTGCCACAATCAATGAGGAAGTTTTGAAAACACTCCATGTGATATTCGTAAACTTTCCTAAGCTCCACACATCTGAAGCAGCAACCCTGTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGGAGTGAAGTTGCTCAAGACTCTGTACTTGACACCTTTTTCTTGCTAAAACAATCTTGGTCTACCATGCCAATAGATATAGCAAAATCTCAAGCCATGACTGCTGCTGAGGCCATCCCCATATTACAAATGCTCATGAAAACCTGCCCACCAAGTTTCCATGAGAGGGCAGATACTCTTCTTCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAACGTGGAAACAACCTCAAGCAAACTATGGGAAGCACTAATGCATTTTGCCAGTTGACAATAGGCAATGGCCCTACAAAACAAACCAAGGTAGTGAACCACAGTACTTCTCCGGAATGGAAAGAAGGATTCACATGGGCATTTGATGTACCTCCCAAGGGCCAAAAGCTCTATATCGTATGCAAAAGCAAGAATACTTTTGGAAAGACAACTCTTGGAAAAGTCACCATCCAAATTGATAAAATTGTGACGGATGGGGTTTATAGTGGACTATTCAGTCTTAGTCATGACGGCAACAAAGATGGCTCTTCCCGAACACTTGAAATCGAGATTATATGGTCCAACAGAATTTCAAATGATGACATTTGA 6408 0.4176 MSKSPSPEQQRSIYSDSKPMEFIEETGMDDPESTMATVANFLEQLHANMSSTLEKELITARLLSVAKRRKDARALIGSHAQAMPLFINILRNGTPLAKVNVASTLSILCKDEDLRLKVLLGGCIPPLLSVLKYESTDARKAAAEAIYEVSSGGLSVDHVGMKIFVTEGVVPTLWNQLNPQNKEDKVVEGFITGALRNLCGDKDDYWKATLEAGGVDIIVGLLYSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQENYISVRASAADALEALSSKSTKAKKAIVDADGVPILIGAIVAPSTECMRGDGGQALQEHATRALANIYGGMSSLILYLGELSHSPRLPAPVGDIIGALAYTLMVFVENLDVDEEHFDATQIEDNLVTLLKPRDNKLIQERVLEAMASLYGNVYLSKWLIQADSKKVLVGLITMAAPDVQEYLILSLTSLCCEKIGIWEAIKKREGIQLLISLVGLASEQHQEYSVQLLAILTHQVDDSKWAITAAGGIPPLVQLLETGSQKAKEEAANVLWSLCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSTSSKAHIIRVLGHVLSIASQKDLLQKGSAANNGLRSLVQVLNSSNVENQEYAASVLADLFITRQDMCDSLATDEIVLPCLKLLTSKTQGVATQSARALCALSRPNKSKAANRMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPSIAAEALAGDVVSALTRVLAEGSLEGKQNASCALYQLLKHFPVGDVLKGNAQCRFAVLALVDSLRAMDMDGTDAADTLGAIALLIRTKQGVDFTYHPWLALVEIPSNIELLIYCLAEGPPLVQDKAIEILSRLCGDQPAVLGDLLFASSRSIVSLANRIINSSSSEVKVGGASLLICVAKEKKELSVDSLDSSGYLKQLIYSLVDMVKLSCFCSSLDIEVFTTKGFMERNAFQEADVFDIPDPAVVLGGTVALWLLSIIASFHLKSKLTVMEAGGLEALCNKLARHTSNPQAEYEDTEGIWISALFLAILFKDANIVLSPATMNIIPSIALLLRSEEVIDKYFAAQALASLVCNGNRGINLAIANSGAVAGLITIIGHIESDMPNLVTLSEEFSLVQNPDQVVLDHLFEIEDVRLGSTARKSIPLLVDLLRPIPERPNAPPVAVRLLISIADGSDANKSLLAEAGALEALNKYLSLSPQDSTETAISELLRILFFNSDLIKHEASTSSLNQLIAVLRLGSRNARYSAARALHELFDADYIRDSELAKQAIQPLVDMLNTTSGSEQEAALLALIKLTSGDSSKACVFTDVEGNPLESLYKILSSASTLELKTHAAHLCYALFGNSKIRANPVASDCIKPLISLMQSGYETAIEYGVCAFDRLLEDEQQVELAAAYNVVDLLVGLVSGENYQLIEATISVLIKLGKDRTPSKHDMVKAGIIDNCLKLFQSAPSSLCSTIAELFRILTNSSAIARSSDAAEIVEPLFNVLLRRDFNIWGQHSALQALVNILEKPQSLASLKLTPSQVIEPLISFLESPSQDIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVRLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPVVVLVKLLHSTLDSTISLALNALAVFERSYGSSAEEMMEAGAMDALLHLIRSHQCEEASAGLLETLFNNVRVREMKVSKYAIAPLSQYLLDPLTRSQSGKLLAALALGNLSQHERHARASDSVSACRALISILEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLFPNTEVAGQAALLIKFLFSTHTLLEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFVNFPKLHTSEAATLCIPHLVGALKSGSEVAQDSVLDTFFLLKQSWSTMPIDIAKSQAMTAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCQLTIGNGPTKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLYIVCKSKNTFGKTTLGKVTIQIDKIVTDGVYSGLFSLSHDGNKDGSSRTLEIEIIWSNRISNDDI* 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0902 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Mtr1g0902 2135 SMART C2_3c 2008 2104 IPR000008 -
Mtr1g0902 2135 PANTHER - 15 2133 - -
Mtr1g0902 2135 CDD C2 2009 2099 - -
Mtr1g0902 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Mtr1g0902 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Mtr1g0902 2135 SUPERFAMILY ARM repeat 77 796 IPR016024 -
Mtr1g0902 2135 Pfam C2 domain 2008 2107 IPR000008 -
Mtr1g0902 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 15 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Mtr1g0902 2135 Gene3D - 1159 1343 IPR011989 -
Mtr1g0902 2135 Gene3D - 1344 1672 IPR011989 -
Mtr1g0902 2135 Gene3D - 157 353 IPR011989 -
Mtr1g0902 2135 SUPERFAMILY ARM repeat 194 463 IPR016024 -
Mtr1g0902 2135 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g0902 2135 Gene3D - 1676 1797 IPR011989 -
Mtr1g0902 2135 Gene3D - 36 156 IPR011989 -
Mtr1g0902 2135 Gene3D - 1798 2005 IPR011989 -
Mtr1g0902 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Mtr1g0902 2135 MobiDBLite consensus disorder prediction 1 16 - -
Mtr1g0902 2135 SUPERFAMILY ARM repeat 859 1111 IPR016024 -
Mtr1g0902 2135 Gene3D - 991 1142 IPR011989 -
Mtr1g0902 2135 Gene3D - 630 970 IPR011989 -
Mtr1g0902 2135 Gene3D - 365 629 IPR011989 -
Mtr1g0902 2135 Gene3D C2 domain 2007 2133 IPR035892 -
Mtr1g0902 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 458 500 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1458 1498 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 157 200 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1289 1329 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1747 1790 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 69 110 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1707 1746 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 202 242 IPR000225 GO:0005515
Mtr1g0902 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Mtr1g0902 2135 SUPERFAMILY ARM repeat 1176 1544 IPR016024 -
Mtr1g0902 2135 SUPERFAMILY ARM repeat 1557 1944 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0902 Mtr-Chr1 10392904 10405128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0902 466 661 U-box Gene Family AT3G46510 29.557 1.43e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0902 - - aprc:113846793 3547.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0902 1 10392904 10405128 Mtr1g0902 1 10392904 10405128 ECH