Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0895 ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAATAGACAAGTTACATATTCAAAGAGAAAAAGCGGGATTTTAAAGAAAGCTAAAGAAATCAATGTTCTATGTGATGCTCAAGTTTCCACTATCATCATTGCTCCTTCTGGAAAAATGCATGAATACATTAGCCCTTCTACCACGTTGATTGATATGCTGGAGAGATATCATAAAGCATCTGGAAAGAGGCTTTGGGATGCCAAACATGAGAACTTAAAGAATGAAATTGAGAAACTCAAGAAAGAGAATGAGGACATGCAAATTCAGCTCAGGCACTTGAAGGGAAAGGATATCAACACACTAAACTACAAGAAGTTGATGAGCTTAGAGGATGTCTTAGAAAATGGTCTCCTCACTGTCCGTCACAAACAGATGGAAGTATACAAGATGGTCAAGAGAAACGACAAGATCTTGAAAGAAGAGAATAGGGAACTTAATTTTATCCTCCAGCAGCAACAAGGGTATGGCAGTGGAAGGTGGGAGATAAATGGATTATAA 543 0.3849 MGRGKIEIKRIENSSNRQVTYSKRKSGILKKAKEINVLCDAQVSTIIIAPSGKMHEYISPSTTLIDMLERYHKASGKRLWDAKHENLKNEIEKLKKENEDMQIQLRHLKGKDINTLNYKKLMSLEDVLENGLLTVRHKQMEVYKMVKRNDKILKEENRELNFILQQQQGYGSGRWEINGL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0895 180 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mtr1g0895 180 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Mtr1g0895 180 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g0895 180 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 178 - -
Mtr1g0895 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g0895 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g0895 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g0895 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g0895 180 Coils Coil 77 111 - -
Mtr1g0895 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 - -
Mtr1g0895 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr1g0895 180 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g0895 180 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Mtr1g0895 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0895 Mtr-Chr1 10290815 10294633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0895 1 143 MADS-box Gene Family AT5G20240 60.839 1.90e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr1g0895 K-box 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0895 K09264 - gmx:100817554 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0895 1 10290815 10294633 Mtr1g0895 1 10290815 10294633 ECH