Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0893 ATGTCGAAGCCGAAATCATTTCAAGGCATAAACGTGTTCATGTCGCGTAACCTTGTTCCGCCTGAAGTCTTCGCTACGCTTCACGATGCCGTAAAAGATAACGGTGCTCAAATTCACCTCTGTTGTGATCCCTCTCGTAATGGTCCTAATGATTATCACATAATTTCGTGTAGTAAACATGAGAAATTTGAAGATCTTAAATCTAAGGGATGTAAAATGCTTGGTCCTAGATGTGTTCTTCAGTGTGCTAAAGAAGGAAGACCTCTGCCTAAACAAGGCTTCACATGTTGCTTTACTATGGATGGTGTCAAAATCCTCGCTTCTGGCTTTGAAATGGAGGAGAGGGTTAAGATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTACATAAACCGACGTCAGATTTGAACTTTGTCATCGTGAAAAATGTTTTGGCTCAAAAGTACAAGTGGGCTTTGAATGTCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCGGATGAGCATCGTGTTGTACCTCAAGAGTCATATAAGGTTCTTCCTTTCTCTGGGTTAAGGATCTGTGTGACTGGATTCCCAGCAGATAAGCGGAAAGAGATGGAAAAGATTATTTTACAAAATGGTGGAAAATACTTTGCAGAATTGACAAAGAAGTGCACACATTTGATTTCTGATATTCCTGAAGGTGATAAGTATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTCACAATGAAATGGTTTGATCAATCTGTTGCTCGAAGAGCATGTTTGAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTGTCTTCGCGTAAGGTGACTAGGGACTTAACAGCGCAACATAGCCAGGAAAAGGATATTGGGAAAATGCAATCTGGCTCATCCTCAAGAGCTGCAGATTCAAATATGCTAGTTTCTGATTGTACCGAGTCTATGGATATAGATCCAGAAGCTACACAGTCAGAACATATGTCGTCTGTTTCAAATGTTCCATTATTTGTTAAAGAGGCAGATGCTGAAGCATGTCCATTACAGACCAGCAATCAATTGAACTTAGATGGTGCTGTTGCCAATGATTCTGAATCTGACGACAATGACCTGTACTTAGCAGAGTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGCGTAAGCTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATACATGTCTTTAAATGATAAGTTGACCCACATAGTAATTGGGAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTATTGCTGCACAAAGTGTCATTTTTGTTGTTAAAACCTCATGGCTGGAAGATTGTGACCGTCAAAAGAGACAAGTCCCTGTTCTAGGACGTCACACTGCTAATGATCTTGTTCTTCCAAAAGTAAAAGGAGCAGTTACTGGCATTGTGCCTATGGATCAAAGTAAAAGCTCAAGCTTTCGCCAAAGCTTCCAAACTGATAAGGTGGTGGGTATTAAGGAATTTGGAGTAATAATGGCAGAATCTTTGGAGAAAAACAAACAAGAGAAACACGATATGGGTATGAATGTTGTGACATTCGATAAAGCATCGGGTAGAACTACGCCACAAACTCAACTTCCTGATAAAAAATTGAGGGGACAAAAGATGACACAACGTGATTCTAATGTACATGTGAAGTCAACAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAGTGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAAAGTATCCACTATACTATTGAATGCCATGGTAAACCCAAGTCGACAGGTGATTATGGAAGTACTTATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCCTTGCTGGATGTTGACAGTCATATTCTTTATTCTCCACTTCCCTGCCGCGTTCCCTTGCCTGGTTTTGAAAATCTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTTTGGAACTTGTGTAAAGTTCTAGGAGCTAAATTTGCAGATAAGTTGACTAAGAAGGTCACCCATTTATTGTGTAAATTTACCAATGGGCCCAAGTATGAGGCTTCTTGTAAGTGGGGGATCCGATCAGTTACATCTGAGTGGATATTTGAATGTGTCAAACAGAATGGAGTTATTGCCATGGATCAATTTTTGCCCAAAGAAGTCACTACTCAAGACCGAGAGGCAGGAGCTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAATGACATGCCGTCCCAGTTTCCAAGTCAATCACAAAGTTCGAGACACACGGCAAATAAAAATGTTGACAATCATAGGACTCATTCTAAAATATCAAGCATTAATAGCAAAAAGGCAAGGCTCATGGAAGAACCTAGCCTGTATAATAAGGCACCTTCTACAGTAAATTCAGGTATTCATGTCTCTGACATGAATTTTTCTAAAGCCAATATGCTCAAGGATGCTCCGGAGGCTGTTGAAATGATAAATGACACACCGCCCCAGTTTCCAAGTCAATTACAAAGCATGAGAAACATGGCAGATAAAAATGTGGATAGTGGCGATGCCAATCACGGGACTCATTCTAAAATATCAAGCATTAATAGCATAAAGTCTAGGCTGGTGGAAGAACCTGGCATGTATAATAAGGCACCTTCTACAGTAAATTTAGGTATTCATGTCTCTGACTTGAATATTTCTGAAGACAATATGCTCAAAGATGACCGGGAGGCAACCCATGCAGTTCCCGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGATCCCCAGGGCATACAGGGTGTGAGAGAAGTATTTACACATCTGATTGTCCAGTCATTGGTGAAGACAATCCAAATCCTCGTACTGTCTTTGGATTATCGAAGCATTGGTTAAACAGAATTGGAAGCAATGATGATAATGGTGAGACTTCTAAAGAACGAAAAGTGGGAATGTATGATGCTTTTAGTGAAAGCCAAACAGAATCTCAGATCGTTGGTTATGAAGAAGATTTGTCTGGAAGGCAAATGCTTATAGATAGAGTTCTAACTCGAAGTAGCATGCAGTGA 3168 0.4031 MSKPKSFQGINVFMSRNLVPPEVFATLHDAVKDNGAQIHLCCDPSRNGPNDYHIISCSKHEKFEDLKSKGCKMLGPRCVLQCAKEGRPLPKQGFTCCFTMDGVKILASGFEMEERVKIEELVTEMGGALHKPTSDLNFVIVKNVLAQKYKWALNVLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLRICVTGFPADKRKEMEKIILQNGGKYFAELTKKCTHLISDIPEGDKYKVAKRWGHIHIVTMKWFDQSVARRACLNEESYPVQSGSLSSRKVTRDLTAQHSQEKDIGKMQSGSSSRAADSNMLVSDCTESMDIDPEATQSEHMSSVSNVPLFVKEADAEACPLQTSNQLNLDGAVANDSESDDNDLYLAECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIVIGNPTEMEKKDVRSIAAQSVIFVVKTSWLEDCDRQKRQVPVLGRHTANDLVLPKVKGAVTGIVPMDQSKSSSFRQSFQTDKVVGIKEFGVIMAESLEKNKQEKHDMGMNVVTFDKASGRTTPQTQLPDKKLRGQKMTQRDSNVHVKSTNVFKGKTFCFSNLFPEERRAEIVQWISQGGGEIISGQTKQSIHYTIECHGKPKSTGDYGSTYISSHWIRSCLEDGSLLDVDSHILYSPLPCRVPLPGFENLRFCVSQYEEKDRILLWNLCKVLGAKFADKLTKKVTHLLCKFTNGPKYEASCKWGIRSVTSEWIFECVKQNGVIAMDQFLPKEVTTQDREAGACTVSQFPTQAVQMINDMPSQFPSQSQSSRHTANKNVDNHRTHSKISSINSKKARLMEEPSLYNKAPSTVNSGIHVSDMNFSKANMLKDAPEAVEMINDTPPQFPSQLQSMRNMADKNVDSGDANHGTHSKISSINSIKSRLVEEPGMYNKAPSTVNLGIHVSDLNISEDNMLKDDREATHAVPDVAAAIEDLLEQTSKMHDQRSPGHTGCERSIYTSDCPVIGEDNPNPRTVFGLSKHWLNRIGSNDDNGETSKERKVGMYDAFSESQTESQIVGYEEDLSGRQMLIDRVLTRSSMQ* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0893 1055 Gene3D BRCT domain 98 184 IPR036420 -
Mtr1g0893 1055 ProSiteProfiles BRCT domain profile. 181 270 IPR001357 -
Mtr1g0893 1055 Gene3D BRCT domain 358 459 IPR036420 -
Mtr1g0893 1055 Gene3D BRCT domain 560 656 IPR036420 -
Mtr1g0893 1055 CDD BRCT_TopBP1_rpt2_like 661 736 - -
Mtr1g0893 1055 Pfam twin BRCT domain 189 252 IPR001357 -
Mtr1g0893 1055 Pfam twin BRCT domain 666 728 IPR001357 -
Mtr1g0893 1055 MobiDBLite consensus disorder prediction 274 309 - -
Mtr1g0893 1055 CDD BRCT_TopBP1_rpt2_like 185 260 - -
Mtr1g0893 1055 SUPERFAMILY BRCT domain 566 652 IPR036420 -
Mtr1g0893 1055 Pfam BRCT domain, a BRCA1 C-terminus domain 565 647 IPR001357 -
Mtr1g0893 1055 ProSiteProfiles BRCT domain profile. 100 183 IPR001357 -
Mtr1g0893 1055 SUPERFAMILY BRCT domain 185 270 IPR036420 -
Mtr1g0893 1055 MobiDBLite consensus disorder prediction 776 806 - -
Mtr1g0893 1055 ProSiteProfiles BRCT domain profile. 663 746 IPR001357 -
Mtr1g0893 1055 SUPERFAMILY BRCT domain 59 182 IPR036420 -
Mtr1g0893 1055 MobiDBLite consensus disorder prediction 535 556 - -
Mtr1g0893 1055 MobiDBLite consensus disorder prediction 291 309 - -
Mtr1g0893 1055 Gene3D BRCT domain 185 271 IPR036420 -
Mtr1g0893 1055 ProSiteProfiles BRCT domain profile. 371 457 IPR001357 -
Mtr1g0893 1055 MobiDBLite consensus disorder prediction 776 790 - -
Mtr1g0893 1055 SUPERFAMILY BRCT domain 371 457 IPR036420 -
Mtr1g0893 1055 Gene3D BRCT domain 658 751 IPR036420 -
Mtr1g0893 1055 SMART BRCT_7 183 260 IPR001357 -
Mtr1g0893 1055 SMART BRCT_7 373 453 IPR001357 -
Mtr1g0893 1055 SMART BRCT_7 97 173 IPR001357 -
Mtr1g0893 1055 SMART BRCT_7 565 640 IPR001357 -
Mtr1g0893 1055 SMART BRCT_7 4 86 IPR001357 -
Mtr1g0893 1055 SMART BRCT_7 660 736 IPR001357 -
Mtr1g0893 1055 SUPERFAMILY BRCT domain 627 747 IPR036420 -
Mtr1g0893 1055 ProSiteProfiles BRCT domain profile. 563 650 IPR001357 -
Mtr1g0893 1055 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 1042 - -
Mtr1g0893 1055 Gene3D BRCT domain 37 94 IPR036420 -
Mtr1g0893 1055 Pfam BRCA1 C Terminus (BRCT) domain 373 449 IPR001357 -
Mtr1g0893 1055 Pfam BRCA1 C Terminus (BRCT) domain 101 169 IPR001357 -
Mtr1g0893 1055 CDD BRCT 103 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0893 Mtr-Chr1 10269975 10280807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0893 1 1054 Core DNA Replication Machinery Family AT1G77320 46.520 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0893 K10728 - gmx:100804966 1297.72