Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0883 ATGGTGAAAGAAACAGAGTATTATGATATCCTTGGAGTTTCTCCTTCTGCTTCCGATGATCAAATTCGCAAAGCTTATTATCATAAGGCAAAACAAGTTCATCCTGATAGAAATCAAAACGATCCCAATGCTGCACACAAATTCCAGATTTTGGGAGAAGCATACCAGGTTTTGAGTGATCCAGTACAAAGGACTGGATATGATCAAAATGGCAAGCATTCTGTATCTAGAGAAACTATGCTTGATCCAATGGCTGTCTTTGCCTTGCTCTTTGGAAGTGAATTGTTTGAGGACTACGTTGGGCATCTAGCTGTTGCATCGATGGCTTCTTCTGAACTAGGTGATGAAAGTGAGGATTTGCAGGAGAAGTTAAAGGAAGTCCAAAAAGGAAGGGAAGAAAAGCTAGCAAGATTTCTGAAGGATTTTCTCAGCCAATATGTTCGCGGTGACCAAAAGGGTTTCTACCAGCGCGCAGAATCTGAAGCAAGACGGCTTTCTCATGCAGCCTTTGGAGTTGACATGTTACATACCATCGGCTATATATACTCAAGACAAGCAGCACAAGAACTAGGGAAAAAGGCCCTTTATCTTGGAGTTCCATTTCTGGCCGAATGGGTTCGTAATAAAGGACATTTTTGGAAATCACAGTTAACAGCTGCTAAAGGTGCTTTTCAGTTGCTCCAACTTCAAGAAGAACTCAGCAAGCAATTTAAAACAAGTGGTAGTTGCCCTGAAAATGTTGACTCCCATATTCGTCTTAATAAAGACACTTTGTTGAATTCTTTGTGGAAGTTGAATGTAGTGGACATAGAAGTAACCCTTGCACACGTGTGTCAAATGGTGCTAAAGGAAAACAATGTTAGGAGAGAGGAACTTAAAGTCCGAGCTACCGCTCTTAAAATTCTTGGAAAGATATTTCAGGAAAAGAATGCAAAAGGAGAAACACTGAAGAAGAAACTCGCTGTTGATTCTGATGACGAAGGAAGCAGCTCTGATTCATCAGACGATGAATCATCACACAGAGCACTAACCTATCGAACTCCCTTTTTCAATCAGGGTATCGGTAGGCTCTTCAAATGCCTTTGTAATCCCGCATTTGATGTGGACGATGAAGAGGAGATAGTTTACAAAGGCAAATGA 1140 0.4096 MVKETEYYDILGVSPSASDDQIRKAYYHKAKQVHPDRNQNDPNAAHKFQILGEAYQVLSDPVQRTGYDQNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHLAVASMASSELGDESEDLQEKLKEVQKGREEKLARFLKDFLSQYVRGDQKGFYQRAESEARRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLAEWVRNKGHFWKSQLTAAKGAFQLLQLQEELSKQFKTSGSCPENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRREELKVRATALKILGKIFQEKNAKGETLKKKLAVDSDDEGSSSDSSDDESSHRALTYRTPFFNQGIGRLFKCLCNPAFDVDDEEEIVYKGK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0883 379 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 362 - -
Mtr1g0883 379 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Mtr1g0883 379 Pfam DnaJ domain 6 68 IPR001623 -
Mtr1g0883 379 SMART dnaj_3 5 63 IPR001623 -
Mtr1g0883 379 CDD DnaJ 6 60 IPR001623 -
Mtr1g0883 379 PRINTS DnaJ domain signature 8 26 IPR001623 -
Mtr1g0883 379 PRINTS DnaJ domain signature 26 41 IPR001623 -
Mtr1g0883 379 PRINTS DnaJ domain signature 43 63 IPR001623 -
Mtr1g0883 379 PRINTS DnaJ domain signature 63 82 IPR001623 -
Mtr1g0883 379 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Mtr1g0883 379 Coils Coil 117 137 - -
Mtr1g0883 379 Pfam X-domain of DnaJ-containing 128 312 IPR026894 -
Mtr1g0883 379 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 362 - -
Mtr1g0883 379 Gene3D DnaJ domain 1 85 IPR036869 -
Mtr1g0883 379 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0883 Mtr-Chr1 10190860 10194882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0883 7 68 C2H2 Transcription Factor Family AT1G74250 41.791 1.76e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0883 - - gmx:100793811 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0883 1 10190860 10194882 Mtr1g0883 1 10190860 10194882 ECH