Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0882 ATGGTGAAGGAAATAGAGTATTACGATATCCTCGAAGTTTCTTCTTCTGCTTCCGATGATCAAATTCGCAAAGCTTATTATCACAAGGCAAAGCAAGTTCATCCTGATAGAAACCACAACGATCCTAATGCTGCACACAAATTCCAGAATTTGTGCGAAGCGTATCAGGTTTTGAGCGATCCAGTACAGAGAAATGTGTATGATCAAAATGGGAAGCATTCTGTATCTAGAGAAACTATGCTTGACCCAATGGCTTTCTTCGCCCAGCTCTTTGGAAGTGGATTGTTTGAGGACTATGTTGGGCATCTAGATGTTGCATCGATGGCTTCTTCTGAACTAGCTAGTGGAATTGAGGATTTGCAGGAAAAGCTAAAGGCTGCCAAGAAAGAAAGGGAAGAAAAGCTAGCAAGATTCTTGAAAGATTTTCTCAGCCAATATGTTCGTGGTGACCAAAGGGGTTTCTACCAGCGCGCAAAATCTGAAGCAAGACGGCTCTCTCATGCAGAGTTTGGAGTTGACATGTTACATACCACAGGCTATATATATTCAAACCAAGCAGCACAAGAACTAGGGAAAAATGCCCTTTATCTGGGAGTGCCATTTCTGGCAGAATGGGTTTGCAGTAAGGGACATTATTGGAAATCACAGTTTACAGCTGCTAAAGGTGCTTATCAGTTGTTCCAACTTCAAAAAGAACTCCGCAAGCAATCTGAAACGGGTGGTAGTTGCCCCGAAAATGTTGACTCACATATTCGTCCTGATCAGGAGACATTTATATTGAATTCTTTGTGGAAGATAAATGTAGCAGACATAGAAGTAACCCTTGCACACGTGTGTCAAATGGTGCTAAAGGAAAACAACGTTAGGAAAGAGGAACTTCAAGGTCGGGCTACCGCTCTTAAAATTGTTGGGAACATATTTCAGGAAAAGAATTCAAAAGGAGAAACACCAAAGAAGAAACTCGCTGATGATTCTGATGACGAAGGAAGCACAGCTCTTTCCTCAGACAATGAATCCCATAGAGCACGAACCTATCAAACTCCCTCTTTCAATCAGGGTATGGGTAGGCTCTTCAAAAAGGAGAAAGTTATTGTGGATGATGAAGAGGAGAAAGTTTACAAAAACCAATGTCTTATCTTTTTGTCTCTTGCTATTTTCATTACTCTTGTGGGTGTACTTCTATCTTCCCTTCCATAG 1197 0.4127 MVKEIEYYDILEVSSSASDDQIRKAYYHKAKQVHPDRNHNDPNAAHKFQNLCEAYQVLSDPVQRNVYDQNGKHSVSRETMLDPMAFFAQLFGSGLFEDYVGHLDVASMASSELASGIEDLQEKLKAAKKEREEKLARFLKDFLSQYVRGDQRGFYQRAKSEARRLSHAEFGVDMLHTTGYIYSNQAAQELGKNALYLGVPFLAEWVCSKGHYWKSQFTAAKGAYQLFQLQKELRKQSETGGSCPENVDSHIRPDQETFILNSLWKINVADIEVTLAHVCQMVLKENNVRKEELQGRATALKIVGNIFQEKNSKGETPKKKLADDSDDEGSTALSSDNESHRARTYQTPSFNQGMGRLFKKEKVIVDDEEEKVYKNQCLIFLSLAIFITLVGVLLSSLP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0882 398 PRINTS DnaJ domain signature 8 26 IPR001623 -
Mtr1g0882 398 PRINTS DnaJ domain signature 26 41 IPR001623 -
Mtr1g0882 398 PRINTS DnaJ domain signature 43 63 IPR001623 -
Mtr1g0882 398 PRINTS DnaJ domain signature 63 82 IPR001623 -
Mtr1g0882 398 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Mtr1g0882 398 CDD DnaJ 6 60 IPR001623 -
Mtr1g0882 398 MobiDBLite consensus disorder prediction 313 348 - -
Mtr1g0882 398 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 362 - -
Mtr1g0882 398 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Mtr1g0882 398 Coils Coil 110 137 - -
Mtr1g0882 398 Gene3D DnaJ domain 1 85 IPR036869 -
Mtr1g0882 398 Pfam DnaJ domain 6 68 IPR001623 -
Mtr1g0882 398 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Mtr1g0882 398 SMART dnaj_3 5 63 IPR001623 -
Mtr1g0882 398 MobiDBLite consensus disorder prediction 313 327 - -
Mtr1g0882 398 Pfam X-domain of DnaJ-containing 128 314 IPR026894 -
Mtr1g0882 398 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0882 Mtr-Chr1 10183804 10187403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0882 7 68 C2H2 Transcription Factor Family AT1G74250 40.299 1.18e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0882 - - mtr:MTR_1g029460 773.081