Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0878 ATGTTTGCCAACGTCGTGATACAACAAATCAACCCATTCACCGCCGCTTTCTGTCAACACTCCTTTCTCAGGTCTCCGCCGCGTCACTCCATTCTCAGGTCTTCTGTGAAAATGGGTTCCTCTGAGAATAAATTCAAAACCCTATCTACTGTTGAAGAAGAAGAAGATGAAGATGGTTCTACAATTAACAACAATTTCTATGATGTTTATGGTCCCCAAGCTAAGGCAGATGTTGTTTTCAAGTCAGAAGATAATTCAACTTTGAGTCTCGTTGACATTCAAGGACTAGTAACTTGGGTGCTTGGCGAAGGATTTATGCCATCATGGGTTTTTATCAAGAATAAACCTCTTATTCTCAAAGTAGTTATGCTCTATATACCAGGCCTGGATGCAGCTTTGTACTTGTCACTGTCCAAAGTGCTTCCTAATTTAAAAAAAGCATGTGGCAAACCAAGACCAGTCCATGCTCTCAGTTGTGTATCAGATAGTATGCAGACAATAGACGCACTCCTTACATGCAAGCAGAAAAGAAAAAGGGATGAAAACGATTCAATTATGAAGAAATCTACTTTGGCATCTCAACAAGAAGAAGTCAGTGGTGGTACTGGTAGTCTATCATTTACGGAGCTTACTAAAGACATACCTTTCCCTGTTACATACTATACCCTAACAGAAAGGGATCTGGAGGAGAATGAGTATCCTGTTAATAAGCCAGGTTTTGTTTCTACTCTTCGTGCTCCTCCGGGGTCTCCCTATAATGAGATGTTAGCAGTTGACTGTGAGATGTGCATAACAGGCGAGGGGTTTGAGCTAACAAGAGTTACTCTGGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTTAAACCTTCAAATCCTATCACCGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGACGACAAGTTTGACAGACATTCAGGAAAAGTTTCAAAAACTGGTTTACAAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTGGTTATTGACACAGCAGTATTATACAAACACCCCAGAGGGTCTTCCCATAAAAGTGCTCTACGATTTCTTACTAAAAGATTTCTTTCAAGGGAGATACAACAATCGGGCGATGGACATGACAGCGTTGAAGATGCCAGGGCTACCATGGAATTAGCACTATTGAAGATCAGAAATGGGCCTAGCTTTGGCGCCGCTCCATCCTTTACGCGAAAAAAGCTCCTTTCCATTTTGGGCGAGTCTGGCAAGACTTCTTCAATGATTGATGACATATCGATAGTAAAACGATTTGCCTCTGAGTCCTCTAACGCAATTCCGGTGACATCTGATGAAGACGCACTTTCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCAATTTATTTGGACTCAATTTTCAGAGTTACACTCATACTTGAAGAAACAAGCTGAGGATTCAGAAAGCTTAAATAAAAAACTTGCAGAGATGATTGCATTAAATACATGTGGTTCTTCGAAAGGGAAAGGTCTCAAGTCGAATATATCTGCTGAACTGAAGGAAATTGTTGCTCGCATGGATGTTAGAATTCATAAACTGTATAAGTCATTACCAACTAATGCTATGATGATAGTTTGCTCTGGTCATGGAGACACGGCAGTTGTTCGCAGGTTGAGGAAAATGCTTACGGAGGAGGGTGAAAGTAATTATGGTCGTGAGAAGATTTTGGAAAGCTTGGGAGAGTTTCAGGCTAGAGCTGAAGTAGCTTTGTGTTTTGTAGGTGTAAAACACTGA 1827 0.4039 MFANVVIQQINPFTAAFCQHSFLRSPPRHSILRSSVKMGSSENKFKTLSTVEEEEDEDGSTINNNFYDVYGPQAKADVVFKSEDNSTLSLVDIQGLVTWVLGEGFMPSWVFIKNKPLILKVVMLYIPGLDAALYLSLSKVLPNLKKACGKPRPVHALSCVSDSMQTIDALLTCKQKRKRDENDSIMKKSTLASQQEEVSGGTGSLSFTELTKDIPFPVTYYTLTERDLEENEYPVNKPGFVSTLRAPPGSPYNEMLAVDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEMLDGVTTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRNGPSFGAAPSFTRKKLLSILGESGKTSSMIDDISIVKRFASESSNAIPVTSDEDALSKTIKELKNEKVQFIWTQFSELHSYLKKQAEDSESLNKKLAEMIALNTCGSSKGKGLKSNISAELKEIVARMDVRIHKLYKSLPTNAMMIVCSGHGDTAVVRRLRKMLTEEGESNYGREKILESLGEFQARAEVALCFVGVKH* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0878 608 PANTHER LD29573P 46 590 - -
Mtr1g0878 608 Gene3D Alkaline Phosphatase, subunit A 419 597 IPR017850 -
Mtr1g0878 608 SMART exoiiiendus 254 413 IPR013520 -
Mtr1g0878 608 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 46 590 - -
Mtr1g0878 608 Gene3D - 252 413 IPR036397 GO:0003676
Mtr1g0878 608 SUPERFAMILY Alkaline phosphatase-like 421 563 IPR017850 -
Mtr1g0878 608 SUPERFAMILY Ribonuclease H-like 255 408 IPR012337 -
Mtr1g0878 608 Pfam Exonuclease 257 403 IPR013520 -
Mtr1g0878 608 CDD REX1_like 256 405 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0878 Mtr-Chr1 10149257 10158818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0878 237 403 C2H2 Transcription Factor Family AT2G48100 32.432 6.27e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0878 K14570 - gmx:100802793 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0878 1 10149257 10158818 Mtr1g0878 1 10149257 10158818 ECH