Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0877 ATGGTGCCACCGGGACCGCCGACTCCGATTGGTGGTTCCCAGTCTGTTTCGCCGTCGCTTATGAGATCGAATTCAGGGATGATGGGAGGTCAAGGAGGACAAGCTTCTTTTCCGTCGTTGGTTTCACAGAGGAATCAGTTTAATAACATGAACAACATGAATAACATGAATATGTTGGGGAATATGTCTAATGTTGCTTCCATGATGAATCAATCTTTTTCAAATGGGATTCCGAACTCGGGGATGTCTGGAATGGGAAGTGGTCAGAGGAGTGGTATGGATGCTGGGGCGGAGCAGGACCCATTGTCTGGTGTTGGGAATGGAATGGGATTTGGTAATCAGTCGTCGTCGTTTGGACAATCAAATGTTGCTAACCCTGGTTCGTCTGGTCAAGGACAAGGTCAGGGTCAGCAATTTTCGAACCCTTCAGGGAATCAGTTGTTGTCCGATCAACAACATTCACAACAGCTTGACGTTCAAAATTTCCAACATGGTCAGCAGCAGTCAGCACAGCAGTTTTCGGCTCCGATGAACACTCAACAACATCAGCAGAACCAGCAGCATTTTCAATCAATGCGAGGAGGGATTGGTGGTATCGGACCTGTGAAGATGGAACCACAGGGAAACAATGATCAGTTTGGGCAGCATCAGTTGTCGTCGATGAGGAATCTTGCTCAGGTGAAAATGGAACCACAACAACTTCAATCTATGAGAGGTATGTCGGCTGTAAAAATGGAGCCCCAGCATAATGATCAGCCATTTTTGCATCAACAGCAGCAGCAACAGCAACAACAACAACTCCTCCATATGTCGAGGCAAACCTCTCAGGCTACTGCTGCTCAGATGAATCTTTTGCAACAACAGAGAATTTTGCAGTTCCAACAGCAGCAACAACTCTTAAAATCAATGCCTCCGCAGCAACGGTCCCAGCTACCGCAGCAGTTTCAACAACAAAATATGCCTGTAAGATCTCCTGCGAAACCAGCATATGAACCTGGAATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGACAACAACATCGAATTCTGGAGGAAATTTGTTGCCGAGTATTTTGCTCCGAATGCCAAAAAGAAGTGGTGTGTTTCCATGTATGGAAGTGGAAGACAAACAACTGGAGTTTTTCCTCAGGACATATGGCACTGCGAAATATGTAATCGCAAACCTGGCCGTGGGTTTGAGGCAACTGCCGAGGTTCTTCCAAGGCTTTTCAAAATAAAGTATGAAAGCGGTACTTTAGAAGAGCTACTGTATGTTGACATGCCTCGTGAATATCATAATTCCTCTGGCCAAATTGTTCTAGATTACGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGGGATGGTCAACTTCGAATAGTTTTCTCTCCAGATCTGAAGATATGCTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTCATCCCTAGAAGATTGTTAATTCCTCAGGTTAGTCAGCTTGGAACAGTTGCTCAAAAATATCAGGCATGTACACAAAATGCAGCAGCCAATCAATCTGTTCCAGAGTTACAAAATAATTGCAATCTGTTTGTTGCATCAGCCCGTCAGCTGGCAAAAGCCTTAGAAGTTCCTTTGGTTAATGATTTAGGATATACAAAGAGATATGTGCGGTGTCTACAAATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTATAGCAGAGAAACAGGGACTGGACCTATGGACAGCTTAGCCAAATTCCCTCGGAGAACAAGTAATTCATCTGGACATCATAATCAGGCGCAACAGTCTGAAGATCAATTACAGCAGCAACAACAGCATATGGTGGCCCCCAACTCAAATGGTGATCAAAACTCTGTGCAAGCTGCTGCTATGCAAGTCCCTTCTAACAATGGTGTGGTAAGTGTAAATAACAATGTCAATTCAGCATCTGCATCGACCACCACAAGCACCATTGTTGGACTTCTCCACCAGAACTCTATGAACGCTAGACAGCAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTAGTTCAGCTCATATTCCATCCCCAGGTTCATGCAGTACAGTGCCACAGGCACAACCAAACTCGTCCCCTTTTCATTCACCAACACCGTCCTCATCTAACAACAACCCGCAAACTTCTCACCCTGGCTTAACATCTGCAAATCACATGGGTACAGTAAACTCACCAGCTAATATTTCCATGCAACAACAGCAGGCATCTGTTTCTGGTGAAGCTGACCCTAGTAATGATGCTCAGAACTCGGTCCAGAAAATAATTCACGACATGATGATGTCCTCCCAGATGAACGGAACAGGTGGAATGGTAGGTGCTAATTCTCTCGGAAATGACATGAAGAATGTAAATGGTATCCTACCGGTGAATACTAATACTGGCGTGAACAGTGGCATCCTCAACGGTGGCAATGGCATGATGAGTAATGGAGGTGTGAACAGTAATTCTGGTGTTGGGGTTGGTGGTTATGGTGCAATGGGTCTTGGTCCATCTGGTTTACCCAATGGAATGAGGCCTGGGATGGGAAATAATTCAGTCATGAATGGAAGGGGAGGAATGGCATCGATTGCTCGGGAACAAGCCATGAATCATCAGCAGGATTTGTCAAGCCAACTACTTAGTGGGTTAGGAGCAGTAAATGGTTTTAATAATCTCCAATTTGATTAG 2736 0.4463 MVPPGPPTPIGGSQSVSPSLMRSNSGMMGGQGGQASFPSLVSQRNQFNNMNNMNNMNMLGNMSNVASMMNQSFSNGIPNSGMSGMGSGQRSGMDAGAEQDPLSGVGNGMGFGNQSSSFGQSNVANPGSSGQGQGQGQQFSNPSGNQLLSDQQHSQQLDVQNFQHGQQQSAQQFSAPMNTQQHQQNQQHFQSMRGGIGGIGPVKMEPQGNNDQFGQHQLSSMRNLAQVKMEPQQLQSMRGMSAVKMEPQHNDQPFLHQQQQQQQQQQLLHMSRQTSQATAAQMNLLQQQRILQFQQQQQLLKSMPPQQRSQLPQQFQQQNMPVRSPAKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDIWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGTVAQKYQACTQNAAANQSVPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLAKFPRRTSNSSGHHNQAQQSEDQLQQQQQHMVAPNSNGDQNSVQAAAMQVPSNNGVVSVNNNVNSASASTTTSTIVGLLHQNSMNARQQNSMNNASSPYGGSSAHIPSPGSCSTVPQAQPNSSPFHSPTPSSSNNNPQTSHPGLTSANHMGTVNSPANISMQQQQASVSGEADPSNDAQNSVQKIIHDMMMSSQMNGTGGMVGANSLGNDMKNVNGILPVNTNTGVNSGILNGGNGMMSNGGVNSNSGVGVGGYGAMGLGPSGLPNGMRPGMGNNSVMNGRGGMASIAREQAMNHQQDLSSQLLSGLGAVNGFNNLQFD* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0877 911 MobiDBLite consensus disorder prediction 12 38 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 72 87 - -
Mtr1g0877 911 Pfam LIM-domain binding protein 338 592 IPR029005 -
Mtr1g0877 911 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 911 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 72 195 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 585 634 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 595 634 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 1 38 - -
Mtr1g0877 911 PANTHER LIM DOMAIN-BINDING PROTEIN 1 911 IPR029005 -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 108 192 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 752 771 - -
Mtr1g0877 911 MobiDBLite consensus disorder prediction 681 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0877 Mtr-Chr1 10138718 10147640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0877 1 911 C2H2 Transcription Factor Family AT1G43850 57.471 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0877 - - gmx:100787573 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0877 1 10138718 10147640 Mtr3g3295 3 46852460 46854419 PCT
Mtr3g3988 3 53624205 53627226 Mtr1g0877 1 10138718 10147640 PCT