Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0870 ATGGAACGTGGAAGTCCTTCATCTAACAACAACCGTTCGGCACACTCAAGCTCTGTCCTTTTGCAAGCAGGGAGTCCATCTCAAAACAATGAATCTCCAAGGACCGAAAACATTGATGTTGAAATTGAGAAACAAGATTTACCTCCAACAAAAAATGAGGAATTGTGTCTTCCCATCCGAAATTTGACAAGAATCATGCGGCGTGCTCTTCCATTGTACGCAAAAATATCTCAAGATGCCAAGGCAACAACACAATTGTGTGTGTCTGATTTCATGGGCATCATCACCACTGAGGCTGTTGAGAAATGCAATGAAGAGAGTCGAAAGATCATTAGCGGTGAAGATATAATACGGGCCATGGGTAGGTTAGGGTTTGAGGACTATGTTGGTCCTCTATCTCTTCTCCTCCAAAACTATCGCAACCATGAGGCTCAATTCAGTGGCATGTCAACTGCTTGTGGATTCAACATGGATGGGTCGGGTACTGGTGGCTCGAGCAGTGGTAATGGCCAATATTGA 519 0.4432 MERGSPSSNNNRSAHSSSVLLQAGSPSQNNESPRTENIDVEIEKQDLPPTKNEELCLPIRNLTRIMRRALPLYAKISQDAKATTQLCVSDFMGIITTEAVEKCNEESRKIISGEDIIRAMGRLGFEDYVGPLSLLLQNYRNHEAQFSGMSTACGFNMDGSGTGGSSSGNGQY* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0870 172 MobiDBLite consensus disorder prediction 1 35 - -
Mtr1g0870 172 SUPERFAMILY Histone-fold 53 146 IPR009072 GO:0046982
Mtr1g0870 172 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 29 149 - -
Mtr1g0870 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 29 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr1g0870 172 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Mtr1g0870 172 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Mtr1g0870 172 PRINTS CCAAT-binding transcription factor subunit A signature 122 140 - -
Mtr1g0870 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 120 IPR003958 -
Mtr1g0870 172 Gene3D Histone, subunit A 44 153 IPR009072 GO:0046982
Mtr1g0870 172 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0870 Mtr-Chr1 9987158 9988882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0870 30 169 CCAAT-HAP3 Transcription Factor Family AT3G53340 41.429 1.94e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr1g0870 CBFD_NFYB_HMF 3.1e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0870 K08065 - tcc:18593281 115.546