Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0857 ATGGAATATAGTATCCTATGTAAAACCACTGTCCATGAAAGTGTTACTAAGATGAAGTACACAAAACCAAAAAAACACACCAACAACAACAACAAAAAATCTATTCAAATACCAAGCGTGATTCGAGTAACATATACTGATCCGGATGCTACTGATTCATCAAGCGATGAAGAATCAAATTTTATCATTCCTCGCAGAAGAATAAAGCGATATGTCAACCAAATGGAAATAGAAACCGTCGCCTCAACGACAGTGTCTGGTAATAAGAGAAAGTCTTTTAGAAGAATGAAACCTTCGCACAGACCTGCGAAGGTTTCAGCTATCACTGGATATGAAAGAAAGTATCGCGGTGTTCGGATGAGACCTTGGGGAAAATGGGCTGCTGAGATTAGAGATCCGGGGTCTAAAGTCCGGTTATGGTTAGGAACTTTCAGCACTGCTGAAGAAGCTGCTATGGTTTATGACGCTGCAGCGATAAAGTTTCGTGGTAAAGACGCTGTTTTAAACTTTGCACCACCGTTGCCGAAGAATGTAGTAAAAGCTGAAGTTGTTAAAGAAAAAATGAAGGTTTCCGCCGTTAAAACGGAGGTTTCAGGTTCCGGTGAAGATTCCGGCGATGAGTTTATTAATCTATCTTCTCCTACTTCAGTACTCCGGTTCAGAAATGAGGAAATTGGTGAACCGGTGAAAATAGTTGAACCGGTTAATGAAAATGAAGATGAACCGGTTGAAGTAGAACCGTTTGGTGAGTGTGAAGGTGAAACGAGGTTTTTCGACGAAACTAATGATATTTTCCGACAAGACATGGATGAAGTGTTCAATTTTCCTACAACATGTGATTATTCACTTATGTTTGATGAAGATCCTATGTTATTTTTTGATGAAACGACAACGGTTTTGGTTGATGAGTGTCGTTTAAGTGATCACGTGGAATTTGATAAAACGCACTTACCTTCATCATCATCATCTTTATGCCAACAACAACAAGAGGATGATTTTCTTGAAGACATTTTGTTAGATTTAGAGCCTCTTGTTATGCTTTGA 1044 0.3898 MEYSILCKTTVHESVTKMKYTKPKKHTNNNNKKSIQIPSVIRVTYTDPDATDSSSDEESNFIIPRRRIKRYVNQMEIETVASTTVSGNKRKSFRRMKPSHRPAKVSAITGYERKYRGVRMRPWGKWAAEIRDPGSKVRLWLGTFSTAEEAAMVYDAAAIKFRGKDAVLNFAPPLPKNVVKAEVVKEKMKVSAVKTEVSGSGEDSGDEFINLSSPTSVLRFRNEEIGEPVKIVEPVNENEDEPVEVEPFGECEGETRFFDETNDIFRQDMDEVFNFPTTCDYSLMFDEDPMLFFDETTTVLVDECRLSDHVEFDKTHLPSSSSSLCQQQQEDDFLEDILLDLEPLVML* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0857 347 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Mtr1g0857 347 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 6 270 - -
Mtr1g0857 347 CDD AP2 114 171 IPR001471 GO:0003700|GO:0006355
Mtr1g0857 347 PIRSF PTI6 7 236 IPR017392 GO:0003700
Mtr1g0857 347 PIRSF PTI6 266 319 IPR017392 GO:0003700
Mtr1g0857 347 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Mtr1g0857 347 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Mtr1g0857 347 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mtr1g0857 347 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Mtr1g0857 347 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Mtr1g0857 347 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Mtr1g0857 347 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0857 Mtr-Chr1 9741587 9743470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0857 7 254 AP2-EREBP Transcription Factor Family AT4G27950 45.059 1.20e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g0857 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0857 - - lang:109327510 242.662