Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0855 ATGGAAACTCAAAAGATTCCAATAGATCATGACACCTTGTTATTATCTGATATATTCAATGAAACTGAGTTTGGTTCAGAGGATCTCTTTTCCATTTTGGAAAACTTCAATAATTTTCCTCCCATTTTCATTGACCATAACTCAAAAACAACATCTTCAAGTGTTCCTCAAGATTCTGAAACTGAGCTTGCTGAAACATCACAAAAATGCAAGAGACAGAAGATTGTAGAGGAACAAAACAACGATGGACAACATCGTATGTCGCATATCACGGTCGAACGCAATCGAAGAAAGCAAATGAATGAGCAGTTATCAATTTTGAAGTCACTTATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCAATAGTTGAAAGTGTAATTGATTACATCAACGAGTTACATCAACTACTACAATGCCTAGAATCCAAGAAACAAAGAAAAGTTTACAATGAAGTACCAAGTCCAAGACCTTTACCACCAAGTCCTAGAATAATCTTCCCAATTAGTCCAAGAACTCCATCCCAATGGTTGCAACAATGTGGTGGTTACCTTTCATCTGAGCCATCTCCAACTTCTTCAGCTTCTTCGATCAACGACAACATCAACGAACTTGTCGGAAATTCAACGTCTTTGGTTGCTGATGTTGAGGTTAAGTTTTGTGGTTCACATGTGCTTTTGAAAACCGTTTCGTCACGAATTCCGGGGCAGGCTCTTAGAATAATGTCTGTTCTTGAAGATCTAAGGCTTGAGATTGTTCATGTTAGAGTTAATACTGCTGATGAAACCATGCTATACTTGTTTACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAGCAAACATTTTATTAA 882 0.3719 METQKIPIDHDTLLLSDIFNETEFGSEDLFSILENFNNFPPIFIDHNSKTTSSSVPQDSETELAETSQKCKRQKIVEEQNNDGQHRMSHITVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVESVIDYINELHQLLQCLESKKQRKVYNEVPSPRPLPPSPRIIFPISPRTPSQWLQQCGGYLSSEPSPTSSASSINDNINELVGNSTSLVADVEVKFCGSHVLLKTVSSRIPGQALRIMSVLEDLRLEIVHVRVNTADETMLYLFTIKIGIECQLSAEELAQQIQQTFY* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0855 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Mtr1g0855 293 SMART finulus 90 141 IPR011598 GO:0046983
Mtr1g0855 293 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 17 292 - -
Mtr1g0855 293 PANTHER TRANSCRIPTION FACTOR FAMA 17 292 IPR044283 GO:0003700|GO:0010052
Mtr1g0855 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 156 IPR036638 GO:0046983
Mtr1g0855 293 Pfam Helix-loop-helix DNA-binding domain 86 135 IPR011598 GO:0046983
Mtr1g0855 293 Gene3D - 74 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0855 Mtr-Chr1 9693993 9696280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0855 19 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 42.136 1.43e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g0855 HLH 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0855 K20558 - gmx:100777437 307.76