Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0842 ATGTGGGGTAATTACTCTACATTAGTTCTTCAATTCTTATGCTTCTTTTTTAGTGTAAATTACTACACTAACCTTGCTTCAAATGATGTTCAATGCATGAAAACAAGGTGTAATCACAAAGATGCTCCAACTATTCAATACCCTTTTAGACTCCAAAACATTCAACCACAAAATTGTGGCAAAATTGGGTATGATCTTTCATGCTATGAGAATCAACAAACCATACTAAAATTGCCAAATTCAATCAATTTTATTGTCAACAAAATTGATTACAAGTCTCAAACAATTCATGTAACATACCCAAATGGATGTCTTCCAAAACTCCTTTCAAATCTTAATGTAACATCCACACCTTTTCATTTCATTGACAATTCAAATTCTAATTATACCCTCTTCAATTGTTCATCCATGAACACTGCTTTACAATCTTATTATTCTTCCATTACTTGTCTTTCTTCTAATGGATACGAAGTTTATGCATTGAACTCTACACTTCAATTAAAGGATGTTACTTTGACATATTGTACAAAGTTGTATGACATGTCTTTTGTTCCGGAAGATGTTGTTTTTAGTCATGGAGATGATCTTATTTTAGGTTGGGATACAAGTTGTGGTAATGAAAGTGAAACTGAACATGAATGTTACAACAATGTCAACAAATCCAAAGGTGCAGGGAAAAAAGTGGAGATTCTAGTACCAATACTATCATGTCTTGGAATTTTACTACTAGTCACTGTACTATACCATTTTCGATATAGAACTCAAAAAGATAAAGAAAACGAAGCAAGAATAGAGAAGTTCTTAGAAGATTACAGAGCATTGAAACCAACAAGGTATAGCTATTCAGACATAAAGAGGATCACAAACAAATTCAAGAACGAATTAGGGCAAGGAGCATACGGAACGGTGTACAAAGGTAAACTATCTAGCGACATATATGTCGCGGTCAAGCTTCTCAAAACTTCCACAGGAAACGGACCAGAGTTCATCAATGAAGTAGGAACAATGAGTCAAATTCATCACGTCAATGTTGTTCACTTAGTTGGCTTTTGTGCCGATGGACACACACGAGCTCTTGTGTACGAGTATTTACCAAATGGTTCGTTGCAGAAATTCATTTCCACAACGGATTTCAAAAACCACTTTTTGAGTTGGGAGAAGTTACAAGAAATTGCGCTTGGAATAGCGAAAGGAATTGAGTATCTTCATCAAGGATGTGACCAGAGGATACTTCACTTTGATATAAAACCTCATAATATCTTACTTGACAATAACTTCACTCCCAAGATATCTGATTTTGGTCTGGCTAAGCTTTGTTCAAAGGATCAAAGTGCGGTTTCCATGACCGCGGCTAGGGGGACTATTGGTTACATAGCACCAGAAGTTTTCTCTAGGAACTTTGGAAATGTGTCGTACAAGTCTGATGTTTATAGTTTTGGAATGTTGTTGCTAGAGATGGTCGGGGGAAGACAGAATGTCGATGTTGTAGAGACGAGAAGTGGTTTAGGGTATTTTCCGGAATGGATTTATAATTTGTTAGAGCAAGGGATTGATTTGAGGGAACATATTGAGGTGGAGAAATACGCGAAAATAGCGAAGAAACTTGCGATTGCTGGACTTTGGTGTATTCAATGGCACCCGGTCGATCGTCCTTCTATGCAAGTTGTTGTTCATATGTTGGAAGGAGATGGAGAAAAATTAAGTATGCCTCCAAATCCATTTGCTTCTGCTGATCCTGCTATAATGAATGTGAGTTTAATTGGAAGGCACCTTCATAGAGAGCAATGA 1788 0.3658 MWGNYSTLVLQFLCFFFSVNYYTNLASNDVQCMKTRCNHKDAPTIQYPFRLQNIQPQNCGKIGYDLSCYENQQTILKLPNSINFIVNKIDYKSQTIHVTYPNGCLPKLLSNLNVTSTPFHFIDNSNSNYTLFNCSSMNTALQSYYSSITCLSSNGYEVYALNSTLQLKDVTLTYCTKLYDMSFVPEDVVFSHGDDLILGWDTSCGNESETEHECYNNVNKSKGAGKKVEILVPILSCLGILLLVTVLYHFRYRTQKDKENEARIEKFLEDYRALKPTRYSYSDIKRITNKFKNELGQGAYGTVYKGKLSSDIYVAVKLLKTSTGNGPEFINEVGTMSQIHHVNVVHLVGFCADGHTRALVYEYLPNGSLQKFISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDNNFTPKISDFGLAKLCSKDQSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVDVVETRSGLGYFPEWIYNLLEQGIDLREHIEVEKYAKIAKKLAIAGLWCIQWHPVDRPSMQVVVHMLEGDGEKLSMPPNPFASADPAIMNVSLIGRHLHREQ* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0842 595 Gene3D Transferase(Phosphotransferase) domain 1 364 569 - -
Mtr1g0842 595 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Mtr1g0842 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Mtr1g0842 595 PANTHER RECEPTOR-LIKE KINASE 27 589 - -
Mtr1g0842 595 SUPERFAMILY Protein kinase-like (PK-like) 272 561 IPR011009 -
Mtr1g0842 595 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Mtr1g0842 595 Pfam Protein tyrosine and serine/threonine kinase 290 560 IPR001245 GO:0004672|GO:0006468
Mtr1g0842 595 Gene3D Phosphorylase Kinase; domain 1 262 363 - -
Mtr1g0842 595 SMART serkin_6 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0842 595 PANTHER RUST RESISTANCE KINASE LR10-RELATED 27 589 IPR045874 GO:0004672
Mtr1g0842 595 ProSiteProfiles Protein kinase domain profile. 289 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0842 Mtr-Chr1 9557961 9560863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0842 203 579 Receptor kinase-like Gene Family AT1G66910 46.096 3.92e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0842 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0842 - - zju:107414589 665.996