Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0828 ATGAGCAGAGGGAAATCCTTCACCTGTTATGAGGAATCAATATCACTTTTAAGCTTCCTCCAAATTGTGATGGTGGTTACTGTGTTACTATTGCATCATCATCATCAAACATGTGATGCAATTACTAATACAAATAACAAAACATATTGTCCACCTTCTTCATGCGGCAAAATCAGCAACATCAAACATCCGTTTCGACTTAAGAATGACCCAGCAACCTGTGGTGATCCAAAGTACGAGTTATCCTGCGAAAACAACATCACAGCGTTAACTCTGTTTTCAGGTAAATACTATGTGCAGGAAATCAACTACATAAACTACACAATTCGGTTAGTTGATCCAGGAATTGAAGAAGGTGATTACTCCTCCATTCCTCGCTATTCTTTAACCAGTTCCAATCTCACAATCTTTCAATACTATGATTACAATGACGCGGATCCATATCAAATCGATACTTATTTTAAACACGGGTACATAATATACTTGAAGTGTAGCAAACAAGTGAATGATGATACTGAGTATGTGGATACAGCTCCCTGCATCAGCTCCGACTCCAAAAGCTATCTTTATGCTTTTGCGTCAGACTTCTGCGTGGAGTACTATGAAGATGACTATGGGTACGAGGAGTGTTACTATTGGAAACACTTTTCAGTTGGGAGATTAAAAGATTATTGCCAAGTGAAGCTTGTTGCTATGTCATCTTATTTTCCTAATGTCAGAGTCAGAGAAGGTGTACCAGATCGATCACTTTCATACCAGGAAATTCATGGAATGCTACTCTATGGATTTCAGCTATCGTGGATGAGCAGTGCTTGTAGAGAACTTTGCGGCGAGAAAAATGAGTGCAAGTTGAATTACACCACCGGAGCTTTTGAATGTTCTGATAATAATTATTGCGAATATCCATTGGGACCTGAAGTCAACAAAAGATGCGACCAAGTGCCAAAGCAGTTCATATTAATGGAAGATATAATACTTGGCATTGTCAAAGGAGTGCTAAAAATATTTGGCTTGACAAAAAGCTCTGTGTTACCACAGAAAAATTTAGAATCTAAAACTGCCATCGACACAGGAAGAGTGATAGGAAGATATCTTTTGCCAATATTTGTTGCAAGATATGTCCCGGGCCTTCTGGTTTTCTTTGTGCTATTGATATATACTTGTCGGAGAAGACATATATCAATGTATGAAGATATTGAAGTTTTTCTTCAAGGGAGTACTTTGATGCCAATTAGGTATTCATACAAAGAAATAAAGAAGATGACTCGAAGTTTTAAAGACAAGTTGGGTGAAGGAGGCTTTGGAGCTGTTTATAAAGGAAAGCTATGCAGCGGGCCATTTGTGGCCATAAAGATGTTGGGTAAATCTAAGGGTAATGGACAAGATTTCATTAGTGAAGTCGCAACCATAGGAAGAATACATCACACCAATGTGGTTCGACTTATTGGGTTTTGTGTTGAAGGATCAAAGCGTGCTCTTGTTTATGAATTCATGTCCAATGGCTCTCTTGATAAATATATTTCCTCTAGAGAGGATACTATCTCTCTAAATTATCAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGTATGGCTTATTTACATCAAGGATGTGACATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATCCTTCTTGATGAGAACTTTATCCCCAAAGTTTCAGACTTTGGTCTTGCTAAGCTTTATCCTAATGAGATTAGCATTGTCACTTTAACTGCAGCAAGAGGAACAATTGGATATATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTATCCTACAAGGCTGATGTATATAGCTTCGGAATGCTTTTGATGGAAATGGCAAGTAAGAAAAGAAACTTAAATCCACATGCCGAACGTTCAAGTCAAATTTTCTTTCCCATTTGGATTTATAATCAATTGGCTGATGAAAGGGAAATAGAAATGGATGAAATCTCATATGAGGAAAATATTAATGTGAAGAAGATGTTCATAATAGCATTATGGTGTATACAATTGAAACCATGTGATCGTCCTTCAATGAACAAAGTGATAGAGATGCTTGAAGGAACTATTGAAAATATTGAAATGCCTCCAAAGCCCTCTTTGTATCCAAATGAAATGATTCAGGAAGACCTTGACATCAACTCTAATGAAATTGAATCTGAAAATTATGGCTCTACTAGTTTAATCGATGACGAAGATGCAACAAAGTCTCTATTGATGAATTCTGCTTAA 2253 0.3711 MSRGKSFTCYEESISLLSFLQIVMVVTVLLLHHHHQTCDAITNTNNKTYCPPSSCGKISNIKHPFRLKNDPATCGDPKYELSCENNITALTLFSGKYYVQEINYINYTIRLVDPGIEEGDYSSIPRYSLTSSNLTIFQYYDYNDADPYQIDTYFKHGYIIYLKCSKQVNDDTEYVDTAPCISSDSKSYLYAFASDFCVEYYEDDYGYEECYYWKHFSVGRLKDYCQVKLVAMSSYFPNVRVREGVPDRSLSYQEIHGMLLYGFQLSWMSSACRELCGEKNECKLNYTTGAFECSDNNYCEYPLGPEVNKRCDQVPKQFILMEDIILGIVKGVLKIFGLTKSSVLPQKNLESKTAIDTGRVIGRYLLPIFVARYVPGLLVFFVLLIYTCRRRHISMYEDIEVFLQGSTLMPIRYSYKEIKKMTRSFKDKLGEGGFGAVYKGKLCSGPFVAIKMLGKSKGNGQDFISEVATIGRIHHTNVVRLIGFCVEGSKRALVYEFMSNGSLDKYISSREDTISLNYQKMYEISLGVARGMAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNEISIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKKRNLNPHAERSSQIFFPIWIYNQLADEREIEMDEISYEENINVKKMFIIALWCIQLKPCDRPSMNKVIEMLEGTIENIEMPPKPSLYPNEMIQEDLDINSNEIESENYGSTSLIDDEDATKSLLMNSA* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0828 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Mtr1g0828 750 ProSiteProfiles Protein kinase domain profile. 423 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0828 750 Pfam Protein kinase domain 426 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0828 750 Pfam Wall-associated receptor kinase galacturonan-binding 50 113 IPR025287 GO:0030247
Mtr1g0828 750 SMART serkin_6 423 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0828 750 SUPERFAMILY Protein kinase-like (PK-like) 407 694 IPR011009 -
Mtr1g0828 750 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 17 723 - -
Mtr1g0828 750 Gene3D Phosphorylase Kinase; domain 1 401 497 - -
Mtr1g0828 750 Gene3D Transferase(Phosphotransferase) domain 1 498 704 - -
Mtr1g0828 750 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 723 IPR045874 GO:0004672
Mtr1g0828 750 ProSitePatterns Protein kinases ATP-binding region signature. 429 451 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0828 Mtr-Chr1 9390228 9406751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0828 28 716 Receptor kinase-like Gene Family AT1G66910 32.459 7.00e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0828 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0828 - - mtr:MTR_1g027830 910.983