Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0827 ATGGTAGTTGTTGTGTTGCTATTTCATGATCATCATCATCAAAGATGTTATGCAATTACTATTACTAATAACCAAACATATTGTCCATCCTCATCATGTGGCACAATCAGAAACATAAAACATCCTTTTCGACTTCAGAATGATCCAGCAAACTGCGGTGATCCGAGGTATGAGTTATCCTGCGAAAACAACATCACAACGTTAACTTTGTTTTCAGGTAAATACTATGTGAAATCAATCAACTACAGAAACTACTCAATGAGAGTAGTTGATCTTGGAATTCAAGAAGGTGATTGCTCCTCCATGCCTCGCTATTTCTTAACCGCAGCCAATTTCACAAGTTCTTACGATTATAATTACCACGGGGATCCATATGAATTGGGTAACGGTCAATCTCTGGTTGAGCACGTAATATACTTGAACTGTAGCAATCAAGTGAAGAACGATCCTCTGTACGTGGATACATCTCCGTGTAGAATCAACTCTGCAAATAACAGCTATGTTTATGCAATTGATAGGGACTTTAGTGTTGGTGAATTAAATGTTGGTTGCCGTGTGAAGATTGTTACTATATCATCAGCTCCAGCTTTAATCGTCACCGAGGGAAGACAACCTTTTCCGTACAAGGAAATTCATAGACTTCTAAGCTATGGATTTGAACTTTCGTGGATGAGACGTGGTTGTGAAGATCATTGTGACAATAACAATCAAAACTGCTTCATGGATTACAACGCCGGATATCTTGTATGTCAAAATGATGATTGCATAACTCCATTGGGACTTCAAATAAATTGTGTACATTTGTCAAAGATGCGCATATTGATTGAAGATGTTATACTTGGCATTGTTAAAGGACTACTCCAAATAGTCGGCGTGACAAAAAGTTCAGAATTAGCAGGTGGAGAATTTGATTTATCCAACAAAGTTTCTGATTCCAAAATTGCCATTAAATTAGGAAGAATAAGTGGAAGGTATATCTTGCCATCATTGGTAATGAGATTTACGACGGGCCTTGTAGTTTTCTTTGTGCTATTGATATATACATGTCGAAGAAAACATGCCTCAATTTACGAAAATATTGAAGTTTTTCTTCGTGGAAGTACCATGATGCCAATCAGGTATTCATACAAAGATATAAAGAAGATGACTAGAAGTTTTAAGGTCAAGTTAGGTGAAGGAGGGTTCGGTTGTGTTTATAAAGGAAATTTAATTAGTGGTCCATTTGTGGCCATAAAGATGTTGGGTAACTCTAAGGGTAATGGGCAAGACTTTATTAATGAAGTTGCAACCATAGGAAGAATACACCATGCAAATGTGGTTAGACTTATTGGTTTTTGTTTTGAGAGATCAAAACGTGCACTTGTTTATGAATTCATGCCCAACGGCTCTCTTGATAAATACATTTCCTCTAAAGATGATGTTATTGATCTAACTTGCAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATGAAGGATGTGACATGCAAATCTTGCATTTTGATATCAAGCCCCATAACATCCTTCTTGATGAGAACTTTATTCCCAAAGTTTCAGACTTTGGTCTGGCAAAGCTTTATCCAAATGACATTAGCATTGTCACTTTAACTGCAGCTAGAGGAACAATTGGATACATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTATCCTACAAGGCCGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAAAAGAAATTTAAATCCACATGCCGATCGTTCAAGTCAAATTTTCTTTCCCATTTGGATTTATAATCAATTGATTGAAGACAAGGAGATAGAAATAGATGAAATTACATACGAGGAAAATAATAATGTGAAGAAGATGTTCATAATTGCATTATGGTGTATACAATTGAAACCATGTGATCGTCCTTCAATGAACAAAGTGATAGAGATGCTTGAAGGAAATATTGAAAATATTGAAATGCCTCCAAAGCCCTCTTTGTATCCAAATGAAATGATTCAGGAAGACCTTGACGTCAACTCTAATGAAATTGAATCTGAAAATGATGGCTCTACTAGTTTAATCGATGACGAAGATGCAACAAAGTCTCTATTGATGAATTCTGCTTAA 2136 0.3614 MVVVVLLFHDHHHQRCYAITITNNQTYCPSSSCGTIRNIKHPFRLQNDPANCGDPRYELSCENNITTLTLFSGKYYVKSINYRNYSMRVVDLGIQEGDCSSMPRYFLTAANFTSSYDYNYHGDPYELGNGQSLVEHVIYLNCSNQVKNDPLYVDTSPCRINSANNSYVYAIDRDFSVGELNVGCRVKIVTISSAPALIVTEGRQPFPYKEIHRLLSYGFELSWMRRGCEDHCDNNNQNCFMDYNAGYLVCQNDDCITPLGLQINCVHLSKMRILIEDVILGIVKGLLQIVGVTKSSELAGGEFDLSNKVSDSKIAIKLGRISGRYILPSLVMRFTTGLVVFFVLLIYTCRRKHASIYENIEVFLRGSTMMPIRYSYKDIKKMTRSFKVKLGEGGFGCVYKGNLISGPFVAIKMLGNSKGNGQDFINEVATIGRIHHANVVRLIGFCFERSKRALVYEFMPNGSLDKYISSKDDVIDLTCKKMYEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDISIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKKRNLNPHADRSSQIFFPIWIYNQLIEDKEIEIDEITYEENNNVKKMFIIALWCIQLKPCDRPSMNKVIEMLEGNIENIEMPPKPSLYPNEMIQEDLDVNSNEIESENDGSTSLIDDEDATKSLLMNSA* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0827 711 Gene3D Transferase(Phosphotransferase) domain 1 459 665 - -
Mtr1g0827 711 ProSiteProfiles Protein kinase domain profile. 384 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0827 711 Gene3D Phosphorylase Kinase; domain 1 363 458 - -
Mtr1g0827 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Mtr1g0827 711 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Mtr1g0827 711 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 684 - -
Mtr1g0827 711 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Mtr1g0827 711 Pfam Protein kinase domain 387 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0827 711 MobiDBLite consensus disorder prediction 685 711 - -
Mtr1g0827 711 SUPERFAMILY Protein kinase-like (PK-like) 368 655 IPR011009 -
Mtr1g0827 711 SMART serkin_6 384 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0827 711 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 684 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0827 Mtr-Chr1 9377444 9389879 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0827 373 680 Receptor kinase-like Gene Family AT5G38280 51.274 8.13e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0827 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0827 - - mtr:MTR_1g027830 1313.9