Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0816 ATGTGGTGGGTATTGGTGGTCTTGTTCTCATTTACACTTCTACTCCACCGAGGCAGCAGCAGTATTATTGATCAAGAACATACTTGCCCCCCTTCATATTGTGGCAAAATTTCCAAGATAAGCTCTCCTTTTCGATTAAAAGATGACCCAAAACACTGCGGTGACAGCAGTTATGAACTAGCTTGTGAAAATAATATAACAAGTTTATATTTATACTCTGCAAAATATTATGTGCAGTCCATCAACTACAACGATTTCACAATCCGATTGGTTGATCCTGGAGTTCAACAATCTAATTGCTCTTCACTTCCTCTCTATTCTTTGTCTCGATCTAATTTCTGCGATACCTATAATCATGAGGACGATGACAATTGCAATGACCCATACCATGCCTTTTTGGCCAGATCAAGACGAATTGTCTCGGCCGCAGGTTCCCATGAGCTTCCTTTTAAGCATATAGTCTACTTGAACTGTACCCATCAAGTAACAGACAATCATAAATATGTGAACACCGCTCCATGCCTTAATTGGAATTCCAAAGGGTATTCTATTTATGCTATGGCTGGTGATTTAGTTGCTCAAGATTTTCAAGTTGGCTGTCATGTGAAATCAGTTACTCTAACTTCTTGGTCGGGTTTGCAAAGAAATCAATTACTTACATATGATGTCATTCATAAGGCGTTAGTGTATGGATTTGAGGTTTCATGGTTTTCTTGTAATAAGGTCTGTAAAAAATCAGAGATGTGCACCGTCATGGATTCAAGCGACAATTCCAGCGCAAGCTTTCTGGATTGCACACCCCTTTGCAAAAATTTTATAGGATATTTTATTAATGATGATTGTGGGATATGGTCTCAGATGACTTCATATGCTCAAAATGCCAAATATACTATCGAAGGAATCTTAGCAGGACTGCGTGAAATAATAAAAGGATCAAACTCAGACTATGATGGTATTGCCGAATATAAAGTAGGAATGACGACGGGACACTATATTCTACCATCACTCTTGTCTGCTAGAATTCTGTTCGGAATAACATTTTTTATTGCACTACTTATATACAAATGGCGAAAAAGACATTGGTCAATGTATGAATGTATTGAAATATATCTACAACAAAACAACCTTATGCCCATTGGATATTCATACAGAGAAATTAAGAAAATGGCTAGAGGTTTCAAAGACAAATTAGGTGAAGGAGGTTTTGGCACTGTGTTCCAGGGGAACCAACGTAGTGGTCCTTGTGTGGCAATCAAGATGCTGGGTAAGTCAAAAGGTAATGGGCAAGATTTTATTAGTGAAGTTATGACCATCGGAAGAATACATCATGTGAATGTGGTGAAATTACTAGGATTTTGTATTGAGGGATCAAAACGCGCTCTTATTTATGAATTCATGTCAAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAAGGGAGTAAAGAATTATGTTGTAGCCAAATACATGACATTTCAATTGGAGTAGCTCGAGGAATTGCTTATCTCCACCATGGATGTGAAATGAAGATATTACATTTTGATATCAAGCCCCATAATATTCTGCTTGATGAGAACTTTATTCCAAAGATATCTGACTTTGGACTCGCAAAGCTATATCCGATTGAGAATAGCATTGTCACAATGACTGCAGCAAGAGGTACTATTGGATATATGGCTCCGGAGTTGTTCTACAAAAATATTGGGGGAGTGTCCTATAAGGCCGATGTTTATAGTTTCGGGATGCTTTTGATGGAGATGGCAAGTAAAAGAAAAAACCTAAATGCCCATGCGGAGTATTCAAGCCAACTTTACTTTCCTTTATGGATTTATGATCAATTTGCACAAGAAGGAGAAATAGAAATAGAAGATGTCACGGAGGAGGAAAATAAAATACTAAAGAAGATGATCATAGTTGCACTTTGGTGTATACAATTGAAACCAGCTGATCGCCCCTCAATGAACAAAGTAGTGGAGATGCTCGAAGGAGATGTTGAAAGCCTTGAAATGCCTCCAAAGCCAATCATTTATCCACATGAAACAGTTGTAGATGATCCAAGAACCAACCTTGACCAAACAATATCGAGTGATGATTACAGTAGTTCTTATGATTATGTGGAAAGAGAACCTAATTCTCTGATAGAGAATATTGCTTGA 2157 0.3746 MWWVLVVLFSFTLLLHRGSSSIIDQEHTCPPSYCGKISKISSPFRLKDDPKHCGDSSYELACENNITSLYLYSAKYYVQSINYNDFTIRLVDPGVQQSNCSSLPLYSLSRSNFCDTYNHEDDDNCNDPYHAFLARSRRIVSAAGSHELPFKHIVYLNCTHQVTDNHKYVNTAPCLNWNSKGYSIYAMAGDLVAQDFQVGCHVKSVTLTSWSGLQRNQLLTYDVIHKALVYGFEVSWFSCNKVCKKSEMCTVMDSSDNSSASFLDCTPLCKNFIGYFINDDCGIWSQMTSYAQNAKYTIEGILAGLREIIKGSNSDYDGIAEYKVGMTTGHYILPSLLSARILFGITFFIALLIYKWRKRHWSMYECIEIYLQQNNLMPIGYSYREIKKMARGFKDKLGEGGFGTVFQGNQRSGPCVAIKMLGKSKGNGQDFISEVMTIGRIHHVNVVKLLGFCIEGSKRALIYEFMSNGSLDKFIFSKEGSKELCCSQIHDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKISDFGLAKLYPIENSIVTMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNAHAEYSSQLYFPLWIYDQFAQEGEIEIEDVTEEENKILKKMIIVALWCIQLKPADRPSMNKVVEMLEGDVESLEMPPKPIIYPHETVVDDPRTNLDQTISSDDYSSSYDYVEREPNSLIENIA* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0816 718 Pfam Protein kinase domain 394 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0816 718 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 691 IPR045874 GO:0004672
Mtr1g0816 718 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Mtr1g0816 718 Gene3D Transferase(Phosphotransferase) domain 1 466 670 - -
Mtr1g0816 718 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524
Mtr1g0816 718 SMART serkin_6 391 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0816 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Mtr1g0816 718 SUPERFAMILY Protein kinase-like (PK-like) 377 662 IPR011009 -
Mtr1g0816 718 Gene3D Phosphorylase Kinase; domain 1 370 465 - -
Mtr1g0816 718 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 7 691 - -
Mtr1g0816 718 ProSiteProfiles Protein kinase domain profile. 391 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0816 Mtr-Chr1 9220813 9228233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0816 381 693 Receptor kinase-like Gene Family AT5G38280 51.713 5.57e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0816 Pkinase 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0816 - - gmx:100305367 848.966