Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0813 ATGTGGCCGGTGACAGTGATATTGGTAGGGTTTTCCCTTCTATTTCAGCAATGCAGAAGCAGCACTACAACAAGTGGGCAAGAGCTTTCTTGTCCCTTTTCATCCTGTGGGAAAATATCAAACATAAGTTACCCATTTCGATTAAAAGATGACCCAAAACAATGCGGAGACAGCAGGTACGAACTAGCTTGTGAAAATAATGTGACAAAATTATATTTATACTCTGCAAAATACCATGTCCAGTCCATCAACTACAATAATTTCACAATCCGATTAGTTGATCCTGAAGTTCAACAATCTAATTGCTCTTCACTTCCGCGCCATTCCTTGTCTCGATCAAATTTCTGTAATACTTATGATTACAACAACAAGAACTGCAATGATCCATACCATGCCAATTTCATTAATCAAGAACTATTTTTCGATTCCAACAAGCTTCTTTTTGAGCATATAGTTTACATGAATTGTACTCATCAAGTGATTAACAATCATAAATATGTGAATGCTTCATCTTGCCTTAATTCGAACTCCAAATCCAAAGGGTATTATATTTATGCTATTGCTGGTAAATTAGTTGCTCAAGATTTTCAAGTTGGTTGTCATGCGAAGTTAGTGGCTCCCACTTCATGGTTGGGAAATTTGCAAAGAAATCAAGTACTTTCATATGATATCATTCATAAGGCGTTAGTATATGGATTTGAGATTTCATGGATGAAACTTCCATGTCAGAAACTTTGCGGAGATTCATTACGTTGCTTCTTCAATTCCAGTGAACAACATCTTCAATGCAATGACTTATGCCGTACTGTTATGGGATCTTGGATCACCGGTAGTTGTGGGATACGGTCCCAGATAGCTTCAATAGTTAGCGATACTATAACCGGTATCATCCAAGGGATGTATGAAATGACAAAAGGAGAAAATTTTTTATTGAAAGGGATACCCAGATATCAATTAGGAATGGCTATTGGACACTATTTTCTACCAATTTTTTTTTGCAGATTTGTATTTGGGATAGCATTTTTTATTGCATTGTTGATATACAAATGGCGAAAAAGACATTGGTCAATGTATGAATGTATTGAACTATATCTACAACAACAAAACAATTCCATGCCTATTGGATATTCATACAAAGAAATTAAGAAAATGGCTAGAGGTTTCAAAGACAAATTAGGTGAAGGAGGCTTTGGCACTGTGTTCAAGGGAAACCTACGTAGTGGGCCCGGTGTGGCAATCAAGATGTTGGGTAAGTCGAAAGGTAATGGACAAGACTTTATTAGTGAAGTAGCAACCATTGGAAGGATACATCATTTGAATGTAGTACAATTATTTGGATTTTGTATTGAGGGATCAAAACGTGCTCTTGTTTATGAATTCATGCCTAATGGATCTCTTGATAAATTTATTTTCTCCAAAGAAGGGAGCATAAATTTAAGCTACAACAAAATTTACGATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTTCACCACGGATGTGAAATGAAGATTTTACATTTTGATATCAAGCCCCACAATATCCTTCTTGATGAGAACTTTATCCCTAAACTATCTGACTTTGGATTGGCAAAGCTACATCCGATGGAGAACAGCGTCATCACAATGACTGCTGCAAGAGGTACAATTGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGGGGAGTTTCCTATAAGGCTGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAGGCAAGAGAAAAAACCTTAAAACCAATGCACAACATTCAAGTCAGATATATTTTCCCTTTTGGATTTATGATCAACTTAGAAAAGAGGAAGAAATCGATATAGAAAATATCTCAGAGGAGGATATGAAAATTGTAAAGAAGATGATCATGGTTGCTCTTTGGTGTATACAACTGAAGCCGAATGATCGCCCCTCAATGAGTAAAGTAGTTGAAATGCTTGAAGGAAATATTGAACGCATAGAAATGCCTCCAGAGCCCACCATGTATCCAGATGAAACAATTTCAAGAGATGAAACAACCAGCTTCGACCAAACAACATCAGGTGATTTCATTAGTTCTAGCGATTCAGGGGAAAACATGAGTAATCCTCTATTAGAGAATACTTCTTGA 2139 0.3661 MWPVTVILVGFSLLFQQCRSSTTTSGQELSCPFSSCGKISNISYPFRLKDDPKQCGDSRYELACENNVTKLYLYSAKYHVQSINYNNFTIRLVDPEVQQSNCSSLPRHSLSRSNFCNTYDYNNKNCNDPYHANFINQELFFDSNKLLFEHIVYMNCTHQVINNHKYVNASSCLNSNSKSKGYYIYAIAGKLVAQDFQVGCHAKLVAPTSWLGNLQRNQVLSYDIIHKALVYGFEISWMKLPCQKLCGDSLRCFFNSSEQHLQCNDLCRTVMGSWITGSCGIRSQIASIVSDTITGIIQGMYEMTKGENFLLKGIPRYQLGMAIGHYFLPIFFCRFVFGIAFFIALLIYKWRKRHWSMYECIELYLQQQNNSMPIGYSYKEIKKMARGFKDKLGEGGFGTVFKGNLRSGPGVAIKMLGKSKGNGQDFISEVATIGRIHHLNVVQLFGFCIEGSKRALVYEFMPNGSLDKFIFSKEGSINLSYNKIYDIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKLSDFGLAKLHPMENSVITMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNLKTNAQHSSQIYFPFWIYDQLRKEEEIDIENISEEDMKIVKKMIMVALWCIQLKPNDRPSMSKVVEMLEGNIERIEMPPEPTMYPDETISRDETTSFDQTTSGDFISSSDSGENMSNPLLENTS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0813 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Mtr1g0813 712 ProSiteProfiles Protein kinase domain profile. 386 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0813 712 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 686 - -
Mtr1g0813 712 MobiDBLite consensus disorder prediction 676 712 - -
Mtr1g0813 712 MobiDBLite consensus disorder prediction 665 712 - -
Mtr1g0813 712 SMART serkin_6 386 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0813 712 Gene3D Transferase(Phosphotransferase) domain 1 461 666 - -
Mtr1g0813 712 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Mtr1g0813 712 Gene3D Phosphorylase Kinase; domain 1 363 460 - -
Mtr1g0813 712 Pfam Protein kinase domain 389 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0813 712 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Mtr1g0813 712 SUPERFAMILY Protein kinase-like (PK-like) 367 657 IPR011009 -
Mtr1g0813 712 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 686 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0813 Mtr-Chr1 9184021 9190304 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0813 27 672 Receptor kinase-like Gene Family AT5G38260 35.045 8.73e-119 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0813 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0813 - - mtr:MTR_1g027440 867.07