Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0765 ATGGCGAGCCAATCTTCAAATGAAGGCGAAGGCAGCTCCAGCACCGGCACCATTGTTTCTGAACAACAAGATTCAACTCTTCATCTCAATATCAAGACTCTTGATTCTCGAATCTACACTTTTCAAGTCGACAAAAATATGCCCGTTTCCCTCTTCAAAGACAAAATTGCAACTGAAGTAGGTTTACCTGTTAATCAGCAACGACTCATTTTTAGAGGAAAAGTCTTAAAGGATGAACACCTTCTTTCTCACTATCATGTTGAGAATGGCCATACATTGCATTTGGTTGAAAGACAGCCAAATCAGACACAGACGTCTGCTACCGGGTCCGGCAGTGAGACAACTAATGCAAATAGTAACCGAGGAAACAATGTTGGTTCAGGAGCTCCACGTAGCCGTGTTGGGCAAATTTCACACAGTGTGGTTCTTGGGACTATTAATGTGGGGGATCAGGGTGGTGAAGGCATTTCTCAAGACATTACTCGGGTTATCGGGGCAGTTTTGAATTCTTTTGCAAATGGTGGCCAGGGTACAATGAATGCTCCTAATTCCGCACAAACTTCTTCGGCTCCACCGGGGAACGGAACTGAAGGAAATCAAGCTGGAAATCAGGCACCGTCTGGACAGGCATTCCAACCGTTTCCTCATGTTGTTCAAATTCCTATGGCTGCTGGAGCCATACCTGTTCCTTCTTTCAATGCTCCAATTCCCCATTCACTCAACACACTGTCTGTGTTCATAAATCGCATGGAACATGCACTCTCTCAAAATGGTTATGGGCCAAATATATCTTCAACTAACCTTGGAGATCAAAGAGCAGAATTGCCTTCCAATACACAAGGGTTGCCAACACTTGAAGCACTAACCACTGTATTGCATCGTACAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCGCTATCTCATATTGCAGGACGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTGTAAGAGGTCAAATACAGTCAGAGTCAGTACAAATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACAGTCTTCGGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCAAATCCTATAATGGTGCAGCCATTTCCACTTCAAACAAGCTCCCTGTTTGGCGGTCCACTTTCTTCTTCAACTCCTGCAACTTTAGGCCCTGTTGGTGTTGGAAGTGCTCCTAGGAACGTAAACATTCACATACATGCTGCAATTGGCTCTAGACCAAACAATGGAGAAGGGACAAGGACTGAACACCGTAGCGAGCCCGGTTCTGGTGATTCAGGTTCGACACGGGGTTTACCTGTTAGAAATGTCATATCGGCAACTCTCCCATCTAACCCTTCTGGCATCGGAGCTGCTGGCAGCACACCAACTGGATTCAGTATCTCCACTTCACAGCTACCACCCGATTCAGCTCCATTGTCATCTGTTTTAGCTGAAATCCAGTCACACTTTAGAAATTCTGTTGGTAATATGCAAGGAGACAACACAATTTTGTCAGGCCAAATGCAATCAACTAGCAGGGACTTGTCTTCTGGATCTGAACAGGTAAATGAACAGAGAGATACCGCGGAGATGAGCGGACATGGGGCTTCCGGTGTATCCTCAGTTGGTTGCACTTCTGAAAGTGGAGTAGAGAAGACCCAAACTGAGGCAATCAAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAATTGTTCTAGTGGAGAAGCAACGGTAAAATCAGAAAAAGTACAGGATGCTCCATCTTCAAGTGAAAAACAAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGACTGGGTATGAGTGGTTTAGAGCGTAAGAGACGAACTAGACTTCAACCTCCTAAAGGTGCTGATGACGGATCCTCCAGTTCTTTCATCAATCAAAGTCAGGAAACCAGGACAGATGGTCAAAATATATTGCAAACACTCGGGGGTCAAGGTTCTGCTGTTAATTTGATAAATGCTGATAGGCCTCAGCGACCCTTGCCCACCAGCGGTAGTCAGATTGATGTGGCGGGTTTAATGTCTCAGGCTCTAAATAGTCCTGCTTTGAATGGTTTGTTGGAAGGGTTTTCACAGCAAACGGGAGTTGACTCACCTGATGGCTTAAGGAGCATGTTGCAACAGTTCACACAAAGCCCGCAGATGATGAACACTGTCAGTCAGATTGCCCAGCAGGTTGGCAGTCAGGATATGGGGAATATGTTAACCGGAACGGAAAGAGGGCAGAGGGGCGGTGTTGACCTCTCAAGGATGCTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGTGGGGGAAATCCTCCACCACTATTCTCTGCTACAGAACCAGAAAGCCCACAGATTAGCCCGATTGCCCAGCAGGTTGGCAGTCAGGATATGAGGAATATGCTAACTGGAACAGAAACAGGGCAGGGTGGTGGTCTCGACTTCTCAAGGATGTTTCAACAGATGATGCCCATGATACAAGCCCTTGGAGGGGGAAATCCTCCACCACTATTCTCTGCTGCAGAGCCAGAAACCCGTGCACCCTACGGGAATGAAAATTCTGATAATCGAAGTTTGCAGGTTTTTATGCATGTTGACCTTCAACCAGTGACTGATAGGATTGATCGCCTGAGTCCACCTACGGATATCTTCCGTGCTGTAGCTGAAAATGCAGTCCAGCTGTCTAGCAGTGAAAGGGCTTCTGATGATCTTTTGGATGAGTTATGTTGCAACGAGAGTCTTGCCGGCGAATATTTGGAGATGTTGCGATCTGATGTAAGTAAGCTGCTCGAAGGACGTTCTGGGAGGGACAAGTCCTAA 2937 0.4607 MASQSSNEGEGSSSTGTIVSEQQDSTLHLNIKTLDSRIYTFQVDKNMPVSLFKDKIATEVGLPVNQQRLIFRGKVLKDEHLLSHYHVENGHTLHLVERQPNQTQTSATGSGSETTNANSNRGNNVGSGAPRSRVGQISHSVVLGTINVGDQGGEGISQDITRVIGAVLNSFANGGQGTMNAPNSAQTSSAPPGNGTEGNQAGNQAPSGQAFQPFPHVVQIPMAAGAIPVPSFNAPIPHSLNTLSVFINRMEHALSQNGYGPNISSTNLGDQRAELPSNTQGLPTLEALTTVLHRTEQLLSGQAVSALSHIAGRMEREGTSADLGVRGQIQSESVQIGIAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPLSSSTPATLGPVGVGSAPRNVNIHIHAAIGSRPNNGEGTRTEHRSEPGSGDSGSTRGLPVRNVISATLPSNPSGIGAAGSTPTGFSISTSQLPPDSAPLSSVLAEIQSHFRNSVGNMQGDNTILSGQMQSTSRDLSSGSEQVNEQRDTAEMSGHGASGVSSVGCTSESGVEKTQTEAIKTCSNDERDVLVDKFVSSSSNQDLQNCSSGEATVKSEKVQDAPSSSEKQDVTEPAKTAPLGLGMSGLERKRRTRLQPPKGADDGSSSSFINQSQETRTDGQNILQTLGGQGSAVNLINADRPQRPLPTSGSQIDVAGLMSQALNSPALNGLLEGFSQQTGVDSPDGLRSMLQQFTQSPQMMNTVSQIAQQVGSQDMGNMLTGTERGQRGGVDLSRMLQQMMPIVSQALGGGNPPPLFSATEPESPQISPIAQQVGSQDMRNMLTGTETGQGGGLDFSRMFQQMMPMIQALGGGNPPPLFSAAEPETRAPYGNENSDNRSLQVFMHVDLQPVTDRIDRLSPPTDIFRAVAENAVQLSSSERASDDLLDELCCNESLAGEYLEMLRSDVSKLLEGRSGRDKS* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0765 978 SUPERFAMILY Ubiquitin-like 22 101 IPR029071 -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 97 133 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 175 210 - -
Mtr1g0765 978 Gene3D - 17 111 - -
Mtr1g0765 978 PRINTS Ubiquitin signature 37 57 IPR019956 -
Mtr1g0765 978 PRINTS Ubiquitin signature 58 78 IPR019956 -
Mtr1g0765 978 PRINTS Ubiquitin signature 79 100 IPR019956 -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 513 568 - -
Mtr1g0765 978 Pfam Ubiquitin family 29 99 IPR000626 GO:0005515
Mtr1g0765 978 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 820 - -
Mtr1g0765 978 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 825 976 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 175 211 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 450 497 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 594 630 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g0765 978 PANTHER OS07G0498800 PROTEIN 11 820 - -
Mtr1g0765 978 PANTHER OS07G0498800 PROTEIN 825 976 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 594 674 - -
Mtr1g0765 978 SMART ubq_7 27 98 IPR000626 GO:0005515
Mtr1g0765 978 ProSiteProfiles Ubiquitin domain profile. 27 102 IPR000626 GO:0005515
Mtr1g0765 978 MobiDBLite consensus disorder prediction 658 674 - -
Mtr1g0765 978 MobiDBLite consensus disorder prediction 427 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0765 Mtr-Chr1 8596877 8607756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0765 27 98 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 8.77e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0765 - - mtr:MTR_1g026290 1858.96