Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0748 ATGACCAAAGTTATGTTTATTTTGGGCACACTCATTGGACTATGTTGTTTCACAATAAATTCCTATGCCTTCAAAGCTTCTGGATGGACCAATGCTCATGCAACTTTTTATGGTAGTGATGCGGAAGGCACTATGGGAGGAGCTTGTGGTTATGGGAATCTGTATTCACAAGGGTATGGGACAAGAACAGCTGCATTAAGTACTGCTTTGTTTAATGATGGAGCTTCATGTGGGCAATGCTACAAAATCATTTGTGATTATAAGACAGACCCAAGATGGTGCATAAAAGGAAGATCTATTACCATAACAGCCACAAATTTCTGTCCTCCAAATTTTGATCTTCCAAACGACGATGGAGGTTGGTGCAACCCACCTCTAAAGCATTTTGATATGGCACAACCTGCTTGGGAAAAGATTGGAATCTATAGAGGAGGGATCGTCCCTGTCTTATTTCAAAGGGTTCCTTGCAAAAAGCATGGAGGAGTTAGGTTCAGTGTGAATGGAAGGGACTACTTTGAGTTAGTGTTGATCAGCAATCTGGCTGGTGCTGGTTCAATCCAATCTGTTTCCATTAAAGGTTCCAAAACTGATTGGATGGCTATGTCAAGAAATTGGGGTGCAAATTGGCAATCCAATGCTTATTTGAATGGTCAATCTATGTCCTTCAAGGTCACAACTACCGATGGAGTAACCAGAACTTTCCAAGACATTGTTCCTTCCAATTGGGGATTTGGTCAATCTTTCTCTAGCAAGATCCAGTTCTAA 765 0.4118 MTKVMFILGTLIGLCCFTINSYAFKASGWTNAHATFYGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQDIVPSNWGFGQSFSSKIQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0748 254 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Mtr1g0748 254 Pfam Lytic transglycolase 63 150 IPR009009 -
Mtr1g0748 254 PANTHER EXPANSIN-A15 4 254 IPR002963 GO:0009664
Mtr1g0748 254 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Mtr1g0748 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Mtr1g0748 254 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Mtr1g0748 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Mtr1g0748 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Mtr1g0748 254 PANTHER EXPANSIN 4 254 - -
Mtr1g0748 254 Gene3D - 161 254 IPR036749 -
Mtr1g0748 254 SMART dpbb_1 63 151 IPR007112 -
Mtr1g0748 254 Gene3D - 15 157 IPR036908 -
Mtr1g0748 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mtr1g0748 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Mtr1g0748 254 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Mtr1g0748 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Mtr1g0748 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Mtr1g0748 254 SUPERFAMILY Barwin-like endoglucanases 28 179 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0748 Mtr-Chr1 8440392 8442878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0748 1 254 Expansin Gene Family AT4G01630 62.891 7.87e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0748 - - gmx:548040 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0748 1 8440392 8442878 Mtr1g0748 1 8440392 8442878 ECH