Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0747 ATGAAACTCTTAAGTTGGAATTGTAGGGGGTTGGGGAACCCTCGGGCAATTCGAGCCTTGTTAAGGCTCATCCGTATCCAAAATCCTCAAGTAGTTTTCTTAATGGAAACTAGATTAAAGTCTGATGAAATGGAGAGAGTCAGAATCAATTGTGGATTCTCTTCTGGTTTGTTTGTTCCTTGTGATGGTTTTGGTAAAGAAAGGGCATGTGATATAGCGCTTTTGTGGATGGATAGTGTAAACCTGTCAATTAGATCTTACTCTCTAAACCATATTATGGGGAGGATTGAAGATGTTGAAAGTGGCAAATATTGGAGTATTACTGGAATTTATGGGTACCCGGATGAAACAAATAAAAAGAAAACATGGGATTTGCTGAGAAGTCTTACTCCGGTTGAGGAGGATATGTGGTTATGTTGCGGGGATTTCAATGATATCCTTTCAAATGAAGAGAAGATCAATCACTTGGCAAGATTTGGGTCTGATCATGCTGCTATTTCTATTGAGTTGGATGTGTGTTTGGAGGATGCGCATAAGAAAAAGCTTCATGTGTTCCGGTTTGAAAAGTGTTGGGCTGATGATGACAGATGTGAAGCAATGGTTAGAGGCTCCTGGAATAATGCAACAGGTTTGGCTAGCAAGATTGAAGCCATGCAATCCCTAGACTCTAAGTTCAAAGAGTACATAACATCTGAAATCAGAAAGGAGCTGTTGGAGATTGAAACCCAACTCAATAACCACGCCTCTTGGGATGGTTCTCCTGATAATATTACAAAGTTCAGAGAGTTGGAAGCTAAACATTCGGAGCTGCTCCAAACAGAGGAGACTATGTGGCGGCAGAGGAGTCGAGCAACGTGGCTGAAGGAAGGGGATAAGAATTCTAAGTTCTTCCATGCAAAAGCGAAACAGAGAGGCAAGATTAACTCAATAAAAAAGATCAAGGATGACAGGGGTGTTTGGTGGAATGGTAGAGATAAGGTGGAGAAGGTGCTTGTTGATTATTTTGCTGGATTATTCACTTCTTCAAATCCAACAACAGTGGATCAGACTTGTTTAGTGGTTAAAGATAGGCTCTCTCCTGAGCATGTGGAGTGGTGTAACCGTAGTTTCTCCCCAGCTGAGATCAAGGATGCGATTGATCAAATGCACCCTCTTAAAGCTCCTGGCCCGGATGGTTTACCTGCTCTTTTCTTTCAAAAGTACTGGTACATAGTTGGGAGTGAGGTTGTTTCTCTAGCCTTGGGTATTCTTAATGAAGGAAAATCAACAGAATGCATCAACAAAACTTTCATAGCTTTGATTCCTAAATGTAAGAACCCATCCTCTCCTAACCAATTCCGCCCCATAAGCCTATGTAATGTGGTGATGAAAATTGTTACTAAAACTATTGCCAACCGGTTAAAGCCAATCCTTCCGGAAATTATGGATGAGGAGCAAAGCGCCTTTGTTCAAGGGAGGCTTATTACTGATAATGCTATTATTGCCATGGAGTGCTTCCATTGGATGAAAAAGAAAACTAAAGGAAAGAAAGGGGTGATGGCGATGAAACTCGATATGGCCAAGGCATATGACCGGATAGAGTGGTCCTTTGTAAAATCCATGCTTCAATCTATGAATTTCCCTGAGAATATCATTAACACTATTTTGCAGTGTATCTCCACAGTTTCGTATCAAATTCTCATCAATGGCCAACCAAGTCGTAGGTTCTTTCCAGAAAGGGGATTGCGCCAGGGTGACCCATTGTCCCCATATCTTTTCATTTTGTGTGCAAATGTGCTCTCGGGTCTCCTTAAGAAAGAAGAAAAGGACAACAAAATTCATGGAATCCGGATAGCTAGGAATGCGCCAAAGATCACCCATTTACTGTTTGCAGACGATGGCCTGTTATTTGCCAGGGCAAGTGTGGAGGAAGCTCAATGTATCATCTCTGTTCTCAATACTTATCAGGATGCTTCGGGTCAAATTGTGAACTTGGACAAGTCTGAGGTTTCATATAGTCGAAATGTGCTTAATCATGATAAAGAAATCATCTGTCAAAGGATTAATATAAAGACTGTGAATACCCATTCCAGATACCTAGGCTTGCCGGTGATTTTTGGTAGGTCTAAGAAGGAGGTTTTCTCCTTTGTCCAAGAGAGAGTGTGGAAGAAGATCAAAGGCTGGAAAGAGAAATGTCTCTCCCGTGCTGGGAAAGAAACTTTAATCAAAGCAGTTGCTCAGGCTATCCCAAATTACATCATGAGTTGTTACAAGCTGCCAGAAGGTTGTTGTGATGCTGTGGAAGGAATGCTGGCCAAATTTTGGTGGGCTTCTGATGAATACAAGAGGAAAATTCACTGGATGAGATGGGGTAGGCTCGGAGAAACCAAGAAGAGAGGGGGCTTGGGCTTTCGGTCTTTCAGTGATTTTAACAAAGCTCTTCTTGGAAAGCAATATTGGAGACTTTTGGCTGACAATAATTCTCTTATGTCTAGTATTCTGAAAAGCAGGTATTTTCCCCGGACAAGCATTTCTATCACCAAGGTGGGATTCCAACCGAGATATGCATGGAGAAGCCTCATGAAAGCTAGAGAGCTGGTGGAGAACGACGCTCATTGGGTGATTGGCAACGGCAGAACTGTTCGGATTTTTAAAGACAACTGGATTCCTGGAACACGGTGTACTCCGATTCAGAGAACAGAAGGTACAGTTGATGAGGATGCAGTCGTAGCTGATCTTATCGTTCACGAAACTCGTTCGTGGGATAGAGAAAGAATTATGGCTTCATTCAACAGCTTCATTGCGAAGAAAATCCTTAGCATCCCAATCTCTTTTAGACTTCCTGATGACAAAGTTACGTGGCAATGGGAGAAATCAGGTGAATACTCAGTTAGGTCAGGCCACCACTTACTGTGTGAGAACAAATCTAAAGAAGTGGCTGAATCCTCCTCAGTGAGAGGATCTGATATTTGGAAGCAGATATGGAATTTCAATGGTCCCAGGAGCGCCCAAAATTTCCTTTGGCGGCTTGCTAGCAACATTCTCCCTACCAGATGTAATCTCAGTAAAAAAGGTATATCTCTGGACCAATCGTGCCCTCTTTGTAACTCTGGTCTGGAAGATTTGAATCATCTCTTTTTGCACTGTCCGGCTGCGAAAGCTGTTTGGTTTTCATCTCCACTTGGAATTCATATTCCTCCCAACAGTATGTGTAGAGAGTGGATGGAACTTTGGTTGAAGAAGGATGACCCTCTAGCTGTCCAGGTTTTTGGTATTACCCTTTGGCGGTTGTGGCAGGGAAGGAACCAATTGATTTTTAAGAACTCACCTTTTGACCCTGCCTTAATTGCGCAGTCAGCAGTGCTTCTAGTTGAAGAGTTTAATTTGGCTAATAGAAAAGCAGCGTGTCATCCAATCTCCCGCGCTCCCACTCGGTGGTGCCCTCCTCAGACAGGTACTGTCAAGATCAATGTGGATGCTGGAGTTTTCACAGATGGCAGCACAGGTTGGGGTTTTGTTGCTAGAGATCACCATGGTGCTGTTCTGTTCTCTGCTACTCGTAAGGAAGAGATGATGGTGACCCCGCTCGTGGCTGAGAGGCTTGCGCTTAGATGGTGTTTAAGCTGGGCGGAAGGGGAGCAATTCACAAGCCTGTGTATAGAGACTGATGCTGAACAGGTTGTTCATTGCCTACTTCGTAGGAAGAAAATTGCAGCTATTGAGTTTCTAATCCTAGACTGTTTAGATTATTTGTCACGTTTTAGCACTTGTTCTGTTAATTTTGCTGGAAGAAGTTGTAATCAAGTAGCCCATAGCCTTGTGGGATTGGCAAAAACAGTTGGAAATATATGTTGGGTGGGGGTTCCTTGCAAAAAGCATGGAGGAGTTAGGTTCAGTGTGAATGGAAGGGACTACTTTGAGTTAGTGTTGATCAGCAATTTGGCTGGTGCTGGTTCAATCCAATCTGTTTCCATTAAAGGTTCCAAAACTGATTGGATGGCTATGTCAAGAAATTGGGGTGCAAATTGGCAATCCAATGCTTATTTGAATGTTCAATCTATGTCCTTCAAGGTCACAACTACCGATGGAGTAACCAGAACTTTCCAAGACATTGTTCCTTCCAATTGGGGATTTGGTCAATCTTTCTCTAGCAAGATCCAGTTCTAA 4146 0.4276 MKLLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKINHLARFGSDHAAISIELDVCLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSWNNATGLASKIEAMQSLDSKFKEYITSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPTRWCPPQTGTVKINVDAGVFTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVGNICWVGVPCKKHGGVRFSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNVQSMSFKVTTTDGVTRTFQDIVPSNWGFGQSFSSKIQF* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0747 1381 Pfam zinc-binding in reverse transcriptase 955 1049 IPR026960 -
Mtr1g0747 1381 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 438 696 IPR000477 -
Mtr1g0747 1381 SUPERFAMILY PHL pollen allergen 1285 1377 IPR036749 -
Mtr1g0747 1381 Gene3D Endonuclease/exonuclease/phosphatase 1 183 IPR036691 -
Mtr1g0747 1381 PANTHER REVERSE TRANSCRIPTASES 72 1161 - -
Mtr1g0747 1381 CDD RT_nLTR_like 428 697 - -
Mtr1g0747 1381 Gene3D - 1288 1381 IPR036749 -
Mtr1g0747 1381 SUPERFAMILY DNA/RNA polymerases 367 668 IPR043502 -
Mtr1g0747 1381 PRINTS Expansin/Lol pI family signature 1271 1287 IPR007118 GO:0005576
Mtr1g0747 1381 PRINTS Expansin/Lol pI family signature 1325 1339 IPR007118 GO:0005576
Mtr1g0747 1381 PRINTS Expansin/Lol pI family signature 1363 1377 IPR007118 GO:0005576
Mtr1g0747 1381 Pfam Reverse transcriptase-like 1152 1267 IPR002156 GO:0003676|GO:0004523
Mtr1g0747 1381 Pfam Expansin C-terminal domain 1289 1366 IPR007117 -
Mtr1g0747 1381 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 415 697 IPR000477 -
Mtr1g0747 1381 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1298 1377 IPR007117 -
Mtr1g0747 1381 SUPERFAMILY Ribonuclease H-like 1147 1270 IPR012337 -
Mtr1g0747 1381 CDD RNase_H_like 1149 1266 IPR044730 -
Mtr1g0747 1381 Gene3D - 1145 1271 IPR036397 GO:0003676
Mtr1g0747 1381 PANTHER - 72 1161 - -
Mtr1g0747 1381 SUPERFAMILY DNase I-like 1 156 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0747 Mtr-Chr1 8433420 8437893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0747 1281 1381 Expansin Gene Family AT1G20190 71.287 7.32e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0747 - - qlo:115951644 860.136