LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g0742	ATGGTTACCACTCAAAATAATCACTCTCCGACGAGTGTTCCGTCACCGGCGCCGCCTTCTGCTGAAACTAACAACCCTAATTTCATTCGGAAAAACCTTCCTTCACCGTGGGCTCAAGTCGTACGCGGCGGCTCCGGCTGGGATACAGAATCACAATCACAATCACCCACCGGAATTCATCAATCACTTCCGTCATCATCGTCTTCCTCCTCCTCCTCTCTCACTACGGTCGACCAACCTCCACCGTCTGATGATTCTCCAAAGGCTGCAGTGGTATCTTCTTCTCCAAAGGCGGTAGTGGTATCTTCTCCGCTTCCGGCTCCGATGGAGAAGAATTCGAATACGATAGCTTCTGATGGTGGTGATGGTGGCAATGCAGGTGGTTCTAAGAAACCTGCATGGAACAAACAACCTTTGAACGGCGTCGCTGTTGAAATTGGTCCTGTCATGGGTGCTGAATCATGGCCTGCTTTGTCTGAATCCGCCAAAATTCCTGGTAAATTGCCACCCGAATCCTCTTCTTCGAAGATTGCTCCTCCTGCTGCTGTTGATGGATCACCTTCCACTTCTCAGGGGCCTATAATTTCACACTCCCCTCAGAGACAAGGTAGTACTAGTAACACAAAATCTAGTTCTATGGCAAACAATAATTTGCCCAATAGACCAAGACCTATGAGGCGCATAAGTGGCAGTAACATTGGGCCTTGTCCTGCTCAGAGCAGCTTATCCAACCCTCCTACTCCTCCACCACTGCCTCCCTATCCTGTATATCAGCTCCCTCCAGCAGTTAGCTACCCGAATATGTTGCCAAGCATCCCTGACTCTTCTCCAAGAGATCATCACCGGAACAATAACTGGGATGCAAGACCATTTGTAGGGGGTTCCTCTCGCAGGGGTCATTTTGGGTCCCATCCACGAGGAGATGGTTCCTATCATCAGAATAGTTATAGTAGCAGGCGTGAACACGATCGTGGAAATTACGCGAACACTAGAGATGCTCACGCACCCCAACCAAGGATGCCTCCCAGAGGAATATTGAGGCCCCCACCACCTAGTACTGCTGCATTTTTGGGTCCTCAAACCATTGGACCCTTCCCAGCCCCTGTTGCTTATCCTGACTTTTATTACTTTCCAACAGTACCGTTGGATCCCTTTAGGGGTATGCCAGTCTTTCCCCACATGCCTTCTCCTGCAACATTCTTTCCTGCTGCAGAATCTTCTTTGTCCAATGTGATAGTCAACCAGATTGATTATTACTTTAGTGATATTAATTTAGCGAATGATGAGTTTTTAAAGTCCAATATGGATGAAGAGGGTTGGGTTCCAATTACCTTGATAGCAAACTTCCCTCGAGTTAAAAATTTGACAAGCAACATTCAATTGATACTTGATTCGATGAGAAATTCAAATGTTGTGGATGTCCAGGGTGACAAGTTGAGGAGGCGTAATTGGATAGACCGGTTGACCTCTGCTCAAGTCCAGGCTGACGCTGGTTCGGTTTCACCCATTGAATCAAGGGACAATAGCTTCACTGCTGATTTTCAAACTATTACTCTGGACAAAACAACTAAAGATGAAGGCGAGTCTTCCCGACAATCTCAACTCTCAAATGGTAGTGATGTTGCCGGTAACATCAATTAA	1641	0.4711	MVTTQNNHSPTSVPSPAPPSAETNNPNFIRKNLPSPWAQVVRGGSGWDTESQSQSPTGIHQSLPSSSSSSSSSLTTVDQPPPSDDSPKAAVVSSSPKAVVVSSPLPAPMEKNSNTIASDGGDGGNAGGSKKPAWNKQPLNGVAVEIGPVMGAESWPALSESAKIPGKLPPESSSSKIAPPAAVDGSPSTSQGPIISHSPQRQGSTSNTKSSSMANNNLPNRPRPMRRISGSNIGPCPAQSSLSNPPTPPPLPPYPVYQLPPAVSYPNMLPSIPDSSPRDHHRNNNWDARPFVGGSSRRGHFGSHPRGDGSYHQNSYSSRREHDRGNYANTRDAHAPQPRMPPRGILRPPPPSTAAFLGPQTIGPFPAPVAYPDFYYFPTVPLDPFRGMPVFPHMPSPATFFPAAESSLSNVIVNQIDYYFSDINLANDEFLKSNMDEEGWVPITLIANFPRVKNLTSNIQLILDSMRNSNVVDVQGDKLRRRNWIDRLTSAQVQADAGSVSPIESRDNSFTADFQTITLDKTTKDEGESSRQSQLSNGSDVAGNIN*	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g0742	546	CDD	LAM	412	482	-	-
	Mtr1g0742	546	Gene3D	-	401	491	IPR036388	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	184	219	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	45	82	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	315	329	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	1	139	-	-
	Mtr1g0742	546	PANTHER	LUPUS LA PROTEIN-RELATED	54	534	IPR045180	-
	Mtr1g0742	546	ProSiteProfiles	La-type HTH domain profile.	402	491	IPR006630	-
	Mtr1g0742	546	SUPERFAMILY	"Winged helix" DNA-binding domain	401	488	IPR036390	-
	Mtr1g0742	546	SMART	la	406	482	IPR006630	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	268	359	-	-
	Mtr1g0742	546	PANTHER	LA-RELATED PROTEIN 1B	54	534	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	241	256	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	520	546	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	529	546	-	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	341	355	-	-
	Mtr1g0742	546	Pfam	La domain	412	468	IPR006630	-
	Mtr1g0742	546	MobiDBLite	consensus disorder prediction	161	256	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g0742	Mtr-Chr1	8406024	8412843	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g0742	K18757		-	gmx:100785504	518.85

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g0742	1	8406024	8412843	Mtr1g0742	1	8406024	8412843	ECH
	Mtr1g0742	1	8406024	8412843	Mtr3g4293	3	56861887	56865349	PCT