Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0729 ATGGATGAAGTGGAGCTAGCTTGTGAGTCTAGCTTGGAATGCAAGAAAACCAAAGAGGAAGGAACGTCGAAAAAACAAAGTAAAGTGGAGAGTGTTTCGTTTTTTGGATTGTTTGGTGCAGCCGATAGAACTGATTATGTGTTAATGTTCCTTGGAAGTGTTGGTTCTTTTGTTCATGGTGCTGCTCTTCCTGTTTCCTTTGTTTTGTTTGGTCGTATGATTGATTCTCTCGGACACCTTTCTAGCAATCCTCACAAATTTTCCTCACAAATTTCTCAGCATGCTTTGTACTTGGTCTATCTTGGAGTTGTTGTTCTTGTTTCTGCTTGGATGGGTGTTGCATTCTGGACGCAAACAGGCGAAAGACAAACGGCTTGGATAAGGTTAAGATATTTGCAGTCAGTACTAAAGAAGGATATTCGTTTCTTTGACAATGAAGCAAAGGATGCCAATATCATTTCTCACATCTCCAGTGATGCAATTTTGGTACAAGATGCAATTGGTGACAAAACCGGGCATGCAATACGTTACCTTTCTCAATTCATTGTTGGATTTGGCATTGGATTGACATCAGTATGGCAGCTGACACTACTCACCTTGGCTGTTGTTCCATTCATAGCTATAGCAGGCCGAACTTACTTAACTATTATATCTACTTTATCGGAAAAAGGCAAAGCAGCTTATGCTGAAGCAGAAAAAGTTGCTGAAGAAGTAATTTCTCGAGTGCGTACAGTTTACTCATTTGCAGGAGAAGAAAAAGCTGTTGGTTCATACTCAAAGTCGCTTGATAAGGCTTTGAAGCTTGGAAAGAAGAGTGGTTTTGCAAAAGGTGTTGGAGTCGGTTTTACATATGGGCTGTTATTCTGTGCTTGGGCATTGCTTCTTTGGTATGCAAGCATACTTGTGATACATCATAAAACAAATGGAGGGAAAGCATTCACAACAATCATCAATGCCATCTTTAGTGGATTTGCCCTTGGTCAAGCTGCTCTAAACATTGGTTCCATTGCTAAAGGGCGAACAGCTGCAGCCAATATCATGAACATGATTGCATCTGTTTCAGAATCATCTAAAATGTTGGATGATGGTTTTGTGTTGTCACAAGTAGCAGGGAAAATTGATTTTTATGAGGTCTATTTTGCTTGCCCCTCAAGAAGCAAAATGATCTTTGAGAATTTGAGCTTCTCAGTGAGTGCTGGAAAGACGGTTGCCGTTGTTGGTTCAAGTAGTTCTGGAAAGAGCACAATCATTTCCCTTATTCAAAGGTTCTATGACCCCACTTCAGGTAAGGTCCTATTGGATGGATATGACTTAAAGAATTTTAAATTGAGATGGTTGAGAAAACAAATGGGATTGGTGAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGAAACATTTTATTTGGAAAAGAAGATGCAAGCGTGAATGAAATCATACATGCTGCCAAGGTTGTAAATGCTCATTCTTTCATAACAGGATTACCTCAAGATTACAATACTCAGGTTGGAGAAGGTGGTACACAACTTTTAGGGGGACAAAAGCAAATAATTTCTTTAGCAAGAGCAGTGCTCAGAAACCCGAAAATATTGCTTTTAGATGAGGCCACCAGTGCACTGGATGCTGAATCAGAACTCATTGTGCAGCAGGCATTGAAAAAAATAATGTTAAACCGGACAACAATAATTGTTGCACATCGATTATCCACTGTACGCAATGTAGATACAATTATTGTGTTGAAGAATGGCCAGGTTGCCGAAAGTGGGACTCATTTAGAATTGATGTCCAGAAATGGTGAGTATGTGAGTTTGCAGGCACCACAAAACTTCACAAGCTCTAGCTCATTATTTCGCTTGGGAAGTTCGAGAAATTATAGTTTTCGAGAAATTCCAAACAACCTGAACAATGAGGAGGTGCAATCAAGTGATCAAGGATTGACATCAAACACTGCTTCCGTTCCATCAATTTTGGGTCTACTGAAACTGAACGCTCCAGAATGGCCCTATGCAATTCTTGGGTCAGTAGGTGCAGTTTTGGCTGGCATGGAAGCTCCTCTCTTTGCCATTGGAATCACACACATTTTGGCTACATTTTACTCTGCTCAAAGTCCCAAGATCAAGCATGAAGTTGATCATGTAGCTGTTATATTTGTCGTCCTGGCTGTTGTTACCATACCTATTTATCTATTGAAACACTACTTCTATTCATTAATGGGAGACCGCCTCACCGCCCGTGTCCGTTTATTAATGTTCTCAGCTATTCTTACCAACGAAGTCGCATGGTTTGATATCAATGAGAACAATACTAGCTCACTTACAGCAACGCAAGCAGCTGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTCTCAACCCTTGTTCAAAACATAGCTCTCACCGTAACAGCATTTGTTATTGCCTTCACAATGAGTTGGAAACTAACATTAGTTGTTGCAGCTTGCCTTCCCTTTCTCATAGGAGCTTACATCACAGAGCAACTATTTCTCAAGGGATTTGGTGGAGATTACAGTCATGCTTACTCCAAAGCAAATTCTTTGGCTCGTGATGCTATTGTGAACATACGTATTGTCACTGCTTTCAGTGCAGAAGATCGAATGTCAACCCAATTCGCATATGAACTGAATAAACCTTACAAGCAGGCACTTCTGAGAGGCCAGATATCAGGTTTTGGTTACGGCTTGACCCAACTGTTTGCTTTCTGCTCCTATGCACTTGTACTTTGGTATGCATCCATATTAATCAAGAAGAAAGAGTCAACTTTCGGAGATCTCATGAAATCTGTTGTGGTCTTAATCATCACTGCTATTGCAATAGTAGAAACAATAGCCCTTACCCCAGATATTGTGAAAGGGACCCAAGCACTGAGATCGGTTTTCAGCATCCTCCATAGGAAAACATCCATCAACCGAAATGATCCGAATAGCAAAATGATAAGTGAAGTCAAAGGAGATGTTAAGTTTCAAAATGTGTGCTTCAAGTACCCAATGAGACCTGATATCACCATATTTCAGAACTTGAACCTCAGAGTCTCAGCAGGAAAAAGTCTAGCAGTAGTAGGCCAAAGCGGCTCGGGGAAGAGCACTGTGATCGCTCTTGTAATGAGATTTTACGACCCTACATACGGGTCGGTTCTGATAGACGAATGTGATATCAAAAGCCTAAATTTGAGATCATTAAGGCAGAAAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCTACGACGGTTTACGAAAATATCAAGTATGGAAAAGAGGAAGCAACAGAAATTGAGGTAATGAAGGCAGCCAAAGCTGCAAATGCTCATGAATTCATCAGTACAATGGCGGAAGGATACAAAACTAAGGTTGGTGAGAAAGGAGTGCAGTTATCAAGAGGACAAAAACAAAGAGTAGCGATCGCTAGAGCAATTCTGAAAGATCCATCCATCCTTCTGTTGGATGAAGCAACAAATGCACTGGACACAATATCAGAGAGACTTGTCCTAGAAGCTATTGATAAGCTTATGGAAGGTCGAACGATGATTTTGGTAGCTCACAGGCTTTCGACTGTTCGCAATGCAGACAGCATTGCAGTGCTGCAACATGGGAAGGTTGCAGAAATGGGAAGACATGAGAAGCTGATGGCTAAACCAGGAAGCATCTATAAGCAACTGGTTAGTCTACAGCAAGAAAAGCATAAACAAGAAGAGAATTAG 3726 0.4085 MDEVELACESSLECKKTKEEGTSKKQSKVESVSFFGLFGAADRTDYVLMFLGSVGSFVHGAALPVSFVLFGRMIDSLGHLSSNPHKFSSQISQHALYLVYLGVVVLVSAWMGVAFWTQTGERQTAWIRLRYLQSVLKKDIRFFDNEAKDANIISHISSDAILVQDAIGDKTGHAIRYLSQFIVGFGIGLTSVWQLTLLTLAVVPFIAIAGRTYLTIISTLSEKGKAAYAEAEKVAEEVISRVRTVYSFAGEEKAVGSYSKSLDKALKLGKKSGFAKGVGVGFTYGLLFCAWALLLWYASILVIHHKTNGGKAFTTIINAIFSGFALGQAALNIGSIAKGRTAAANIMNMIASVSESSKMLDDGFVLSQVAGKIDFYEVYFACPSRSKMIFENLSFSVSAGKTVAVVGSSSSGKSTIISLIQRFYDPTSGKVLLDGYDLKNFKLRWLRKQMGLVSQEPALFATTIAGNILFGKEDASVNEIIHAAKVVNAHSFITGLPQDYNTQVGEGGTQLLGGQKQIISLARAVLRNPKILLLDEATSALDAESELIVQQALKKIMLNRTTIIVAHRLSTVRNVDTIIVLKNGQVAESGTHLELMSRNGEYVSLQAPQNFTSSSSLFRLGSSRNYSFREIPNNLNNEEVQSSDQGLTSNTASVPSILGLLKLNAPEWPYAILGSVGAVLAGMEAPLFAIGITHILATFYSAQSPKIKHEVDHVAVIFVVLAVVTIPIYLLKHYFYSLMGDRLTARVRLLMFSAILTNEVAWFDINENNTSSLTATQAADATLVRSALADRLSTLVQNIALTVTAFVIAFTMSWKLTLVVAACLPFLIGAYITEQLFLKGFGGDYSHAYSKANSLARDAIVNIRIVTAFSAEDRMSTQFAYELNKPYKQALLRGQISGFGYGLTQLFAFCSYALVLWYASILIKKKESTFGDLMKSVVVLIITAIAIVETIALTPDIVKGTQALRSVFSILHRKTSINRNDPNSKMISEVKGDVKFQNVCFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPTYGSVLIDECDIKSLNLRSLRQKIGLVQQEPALFSTTVYENIKYGKEEATEIEVMKAAKAANAHEFISTMAEGYKTKVGEKGVQLSRGQKQRVAIARAILKDPSILLLDEATNALDTISERLVLEAIDKLMEGRTMILVAHRLSTVRNADSIAVLQHGKVAEMGRHEKLMAKPGSIYKQLVSLQQEKHKQEEN* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0729 1241 SUPERFAMILY ABC transporter transmembrane region 37 346 IPR036640 GO:0005524|GO:0016021
Mtr1g0729 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 608 IPR027417 -
Mtr1g0729 1241 Pfam ABC transporter transmembrane region 50 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g0729 1241 Pfam ABC transporter transmembrane region 673 944 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g0729 1241 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 32 1232 IPR039421 -
Mtr1g0729 1241 Gene3D - 363 610 IPR027417 -
Mtr1g0729 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 608 IPR003439 GO:0005524
Mtr1g0729 1241 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 32 1232 - -
Mtr1g0729 1241 Gene3D - 985 1241 IPR027417 -
Mtr1g0729 1241 Pfam ABC transporter 1013 1161 IPR003439 GO:0005524
Mtr1g0729 1241 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Mtr1g0729 1241 CDD ABC_MTABC3_MDL1_MDL2 994 1232 - -
Mtr1g0729 1241 SUPERFAMILY ABC transporter transmembrane region 660 972 IPR036640 GO:0005524|GO:0016021
Mtr1g0729 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1230 IPR003439 GO:0005524
Mtr1g0729 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g0729 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g0729 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 346 - -
Mtr1g0729 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 977 - -
Mtr1g0729 1241 Gene3D ABC transporter type 1, transmembrane domain 37 963 IPR036640 GO:0005524|GO:0016021
Mtr1g0729 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1232 IPR027417 -
Mtr1g0729 1241 SMART AAA_5 399 585 IPR003593 -
Mtr1g0729 1241 SMART AAA_5 1021 1207 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0729 Mtr-Chr1 8246926 8252806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0729 25 1238 Calmodulin-binding Proteins AT2G36910 46.160 0.0 1114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0729 K05658 - gmx:100787093 1857.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0729 1 8246926 8252806 Mtr1g0729 1 8246926 8252806 ECH