Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0726 ATGACTCTTGAAGACTTCTTTACTTTGACCGAGATGAAAGATGGGCTCACAACCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTGATGAAGAAGGAGCAAGACAGTATTGTGAAGAACACTGGTGATGCAATAAGACAATGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGACCTTTTTATTCAATTAGATGGACCGTGGTTCATCGATAGATGGTTAAATGATGCTCAAAAATTGGGTGGTGGTACAAATGATAGTGTCATGGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTATATCAAGACAGTGAGAAGCTAATTTCATCAGGAATGTGGGCCACTGTAAGTAACCTTCTTGGTCATCACAGCTCCAAGGTTCAAGATAGAGCAAGAGCACTATTTGACAAGTGGAAAGAAGTTGGAAATGGAGATGCTAAGTCTCATGATATGGATACTGGTCAAAGAAACCATATGATTGATAAGAATCTCAAGGAGGAAGGCCAGTTGTCTTCAGTGAGCGGGGCTAGTAATGACAATGTTCATGTGTTGCGACTTGAAGGGGGTGAGAAGTCTGTACTGAGAAGCTCAGATACTCAGATACCAGATAAGGCTGCTAATGTTAAGAAAGAGAGTTCTGACAATGCACATCAGTCCTCTGCAAGTTTGAATTGTGAAGAGCTCAAAGAGAGATCAAACCATCTTACTACTGTTTTGACTTCTGTTCAAGAAAGTGCTTCCGCAAGTGAAAGTGAATTGACATCGTCTGGGATCTGCAACTTACCTGTACCGAAACAAGGAAGTTTCAAAGATCAACCTGATGATTTACAGTTGAATGACTTATCAATGAAGGAGGAGCAGGAACTAAATGATAATGGCCCTCCAGAGAAATTAGGAGCACCAATAAATCCTAAGCCTGAATCTGTTTCTGTTGGTGCTAGTGAAGCACAAGTTAAGCCTGTGCCTGCACCAATAGTGCCTGAATCTTCTTTGGAACATGATGTCAAAAGCAGTGAAGTTGGTATTTGTGATAAAGTAATAGTTTCTGGTAGCATGAAAACACCTGCCTCTGATAAAATGAGTGTGGTGGATGGTGCCAGAGCCACAGATTCTAGCAATCCACAACTATCTAAAGCTTCAATGGAGGAAGAAGGCAATAGCCAAGTTTCTAATCACGTCGACGATACCTCAAATGGCTCTGATTCTTTTAAACAAAGAAAAGATCCGACAAGCCCCAACATTATTGACAAGAGTTCTGACATGGAACTCGATTATGGTATTGTTGATGCTTTAGATGTTGCTCGACAAGTTGCTGAGGAAGTTACTCAAGTTTCTGATCAAGATGATGATACCTCAAATAGTTCTGATTCCTTCAAACAGAGCAAAGTTTCCAGAAGCGCTAACATTGTGAACAAGAATTCTGAAATTGAACTTGACTATGGCATGGTTGATGCTTTACAAGTCGCTCGACAAGTTGCTGAGGAAGTTGAGAGAGAAATCAATAACTCTTCTTCAGAGAAAAGCTCAGAAGGTGGAACAAGGCAAGCTGGCAGCCCGGAATCTGTTGGCAAAAATGATGACCTTGCATGTGCCCTACCCGAGGTGTCATCCAGACAAAGCAACTCCGCTGAAGCATGTCCTGAGGAGAGGCATATGAGTGTTTCAGATGATGTTGTAGCTGAGCCAGAATGCATCCCTGACTTGGAGTCTTCGCAGTTGACTGAAGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTTTGCACCTTTGATCTTAATGAAGAATATGGTTCTGATGATATGAATGTTTCTGCAAATACCATATCTACAACACCGATACCTGTTGTCTCTGCTTCAAAACCTGCACAGACTTCAGGATTGCCAACAGCCCCTCTACAGTTTGAAGGAACACTTGGATGGAAAGGGTCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATGCTGATAATCAGAAGAATGTTTCTGCTGGTGGGAACTCTGATATTTCCAAACAAAGGCAAGATTTTCTTGACTTTGATCTGAATGTGGCTGGGGGTGAAGATGAACTGGTAAAACAAATTGGTGAATCTTCAGGCTTGCCTTCTGGGCAATCATCAGTGGAACATAGCCCTAAAAGATCAAAGAGGTTTGAATTAGATTTGAATAGTATTGGTGATGATGGTGATACCCAACCTTCAGATCAGAGGATGGAGGGGCAGCTCTTCTTTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCATCATCGTCGTCAATGCAGCCGTCAGTTCGAAACATTGATTTGAATGATAGACCGTACTTTCAAACTGATTTACTGGACCAAGGGCCTACCAAATCTTCTTCGAGTATTGAAGTATATGGACTTTCCAAATCAGATGCTCCTGCAATATCTATTTTGGGTGCCAAGGTGGAAGTCGGTAGAAAAGAGCCTGTTCCTCAAATTTGGTCTTTGCCAAATGGCAAGGCTGTTGAGCCTGCAATAGATCTTACAATGATGCCAGGATCTGGTGGCGTTTCAGGGATGGGCCCTGCGGTATCCTATAATCATTCAACTTTTTTGGGATATAATGGACTGACATCAATGCCCCCTTTGTCTTTTTCACCAGCCGTGTATGGATCAGGTGGTACAATTCCTTACATGGTGGACTCAAGAGGAGCTCCGGTGGTACCTCAAGTTGGGGGATCTTCCTCAAATGTCCTATCATCTTACGCTCAGCCCCCATATATTATGAGCATGGCCGGTCCACAACTTGGTTTAAACGGTGTTGGACCTTCCCGTCCCAACTTTGATCTTAACTCGGGTTTCATGATTGATGGCGGGAATAGAGATGCATTGACTGCACGGCCGTTTTTCTTTCCTGGTCAAAGCAGAGCTATGGAAGATAGGACCCTTCAACAATCCTCAAGTTCAGGGGTTGGTGGCAAAAGAAAAGAACCAGATGGTAGCGGGTGGGAAACATATCCATTTGGCTACAAACATCAGCAACAACCTCCGTGGAAGTAG 3063 0.4336 MTLEDFFTLTEMKDGLTTPSRVQELVSVMKKEQDSIVKNTGDAIRQWAAVASTIAATENKDCLDLFIQLDGPWFIDRWLNDAQKLGGGTNDSVMEESITAMLRAVEKLYQDSEKLISSGMWATVSNLLGHHSSKVQDRARALFDKWKEVGNGDAKSHDMDTGQRNHMIDKNLKEEGQLSSVSGASNDNVHVLRLEGGEKSVLRSSDTQIPDKAANVKKESSDNAHQSSASLNCEELKERSNHLTTVLTSVQESASASESELTSSGICNLPVPKQGSFKDQPDDLQLNDLSMKEEQELNDNGPPEKLGAPINPKPESVSVGASEAQVKPVPAPIVPESSLEHDVKSSEVGICDKVIVSGSMKTPASDKMSVVDGARATDSSNPQLSKASMEEEGNSQVSNHVDDTSNGSDSFKQRKDPTSPNIIDKSSDMELDYGIVDALDVARQVAEEVTQVSDQDDDTSNSSDSFKQSKVSRSANIVNKNSEIELDYGMVDALQVARQVAEEVEREINNSSSEKSSEGGTRQAGSPESVGKNDDLACALPEVSSRQSNSAEACPEERHMSVSDDVVAEPECIPDLESSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDMNVSANTISTTPIPVVSASKPAQTSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKNADNQKNVSAGGNSDISKQRQDFLDFDLNVAGGEDELVKQIGESSGLPSGQSSVEHSPKRSKRFELDLNSIGDDGDTQPSDQRMEGQLFFGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLLDQGPTKSSSSIEVYGLSKSDAPAISILGAKVEVGRKEPVPQIWSLPNGKAVEPAIDLTMMPGSGGVSGMGPAVSYNHSTFLGYNGLTSMPPLSFSPAVYGSGGTIPYMVDSRGAPVVPQVGGSSSNVLSSYAQPPYIMSMAGPQLGLNGVGPSRPNFDLNSGFMIDGGNRDALTARPFFFPGQSRAMEDRTLQQSSSSGVGGKRKEPDGSGWETYPFGYKHQQQPPWK* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0726 1020 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 447 481 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 260 283 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 500 596 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 654 681 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 721 735 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 374 425 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 707 747 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 976 1020 - -
Mtr1g0726 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 452 1020 - -
Mtr1g0726 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 394 450 - -
Mtr1g0726 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 396 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 979 993 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 662 681 - -
Mtr1g0726 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 452 1020 - -
Mtr1g0726 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 394 450 - -
Mtr1g0726 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 396 - -
Mtr1g0726 1020 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 158 IPR035441 -
Mtr1g0726 1020 Coils Coil 494 514 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 579 596 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 361 429 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 201 230 - -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 455 481 - -
Mtr1g0726 1020 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 152 IPR035441 -
Mtr1g0726 1020 MobiDBLite consensus disorder prediction 513 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0726 Mtr-Chr1 8223976 8230097 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mtr1g0726 Med26 0.00034 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0726 - - lja:Lj5g3v0238160.2 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0726 1 8223976 8230097 Mtr1g0726 1 8223976 8230097 ECH