Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0704 ATGGACATGGACCTCGACAACAACAAAGATGCAAAACCCATTTTGGTAATCTTAGTTGGTGCACCTGGAAGCGGGAAATCCACCTTCTGTGAAGAAGTTATGCGTTCCTCTTCTCGCACATGGCTTCGCGTTTGTCAGGACACTATTGGAAACGGTAAAGCAGGAAGTAAAGCTCAATGCCTAAGTAGTGCAGCTAGAGGATTGAAAGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAATAGAGAACAGCGGTCAGATTTTTTAAAGCTTCGGGGTGAATCCCAAATAGATATCCATGCAGTTGTACTCGACCTTCCTGCCAAGCTGTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAAGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAGTAAAGAGTTGCCCAAATTAAGCGAAGGCTTTAACCGAATAACATTTTGTCAGAGTGAGAGTAATGTCAAAGATGCTATTGATACATATCAAAAACTTGGGCCACTGGAGAACCTTTCACATGGCTGCTTCGGTCAGAAAAATCCAGATTCCAAAATCCAATCTAGTATAATGAAATTCCTGAAAAAGGCAGAGGTACCAGTTGATACTGCATCTAAAGAAAATACCATTGGAGACTCTACTTCCCAGACTTCTGGAAAAAATGATTCCCTCTGCAAAGATATGGAAAAAATCCCATCAGCGCATGATAATTCCAAGTTAGGGTCAAAAGATATAGAAGGTCAGACTAATATACCTGCTGGTTCCTGTCACAATCAAGTTTCTCTTGATGATACTCCGACTCTGGCATTTCCCTCTATTTCAACAGCAGATTTCCAATTCAACCATGACAAGGCAGCAGATATTATTGTTGAGAAGGTTGTAGAGTACTCAAATAAGATGGAGAATGCCAGACTTGTTCTAGTTGATTTGACACATAGATCAAAAATTTTGTCCTTAGTTAAATCCAAAGCGGCAGAAAAGAACGTCGACACCCAGAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTTATTCAACTGGAGGTTTGCGCTGTAATGTCATTGCAAATGCTGCGAACTGGCGACTGAAACCTGGCGGTGGAGGTGTTAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCGAAGACTGTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACCAGAGAAGGTGTGACCCATGTCATACACGTCCTTGGACCTAATATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAGAGGCTGCAAGGTTCTCCAGGATGCTTATGCATCACTATTTGAAGGTTTTGCATCAATTGTTAGGAACACGGTACATCAAAATGAAAACCTTGGAAAAAAGTCTTTGGAGTTGCAAGATCAGTCTGAACAGTGTTCCAGAAATACCGATCAAAAGAGTAAGAGAGATGCTGATCACGAATTGGAAAAAAGCAAGAAATACAAGGGAACCCATGATGGTTTTGACACGACCTTTACGGGTTCTAGAGATGAAAAGGTAGATTCAGAGCATAAAAGAACCGATGGGAGCACAAAGAAGGCATGGGGATCATGGGCTCAAGCTCTTCATCTAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTGCTTGAAATTTCAGAGGACATTGTTGTATTGAATGATATGTATCCTAAGGCACAAAAACATGTTCTGGTGTTGGCACGGAGTGGAGGTCTCGATTGCCTGTCAGATGTCCAAAATGAGCACCTTTCGGTATTGAAAAGGATGCATGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTGAGTGAGAATTCTTCACTGGTATTTCGCCTTGGATATCACTCGGTTCCTTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGACTCAAAACATTTGAAGAATAAGAAGCACTGGAACTCGTTTAACACTGCTTTCTTTCGCGACTCAGTAGATATAATTGATGAGGTATCTATTCATGGAAAAGCAACATTGAAAGATGATGACAAGCTACTGTCTATGGAGTTGAGGTGCCACAAATGTAAAAGTGCACATCCAAACATACCCCGCTTAAAGTCACATATTAGTAGCTGTCAAGCACCCTTTCCTGCTAACCTACTCGAAAACGGGCGTTTGGTTGGTGCCTGCACCAAGTAA 2244 0.4158 MDMDLDNNKDAKPILVILVGAPGSGKSTFCEEVMRSSSRTWLRVCQDTIGNGKAGSKAQCLSSAARGLKDGKSVFIDRCNLNREQRSDFLKLRGESQIDIHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQSESNVKDAIDTYQKLGPLENLSHGCFGQKNPDSKIQSSIMKFLKKAEVPVDTASKENTIGDSTSQTSGKNDSLCKDMEKIPSAHDNSKLGSKDIEGQTNIPAGSCHNQVSLDDTPTLAFPSISTADFQFNHDKAADIIVEKVVEYSNKMENARLVLVDLTHRSKILSLVKSKAAEKNVDTQKFFTHVGDITRLYSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTVSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYERGCKVLQDAYASLFEGFASIVRNTVHQNENLGKKSLELQDQSEQCSRNTDQKSKRDADHELEKSKKYKGTHDGFDTTFTGSRDEKVDSEHKRTDGSTKKAWGSWAQALHLIAMHPEKHKDDLLEISEDIVVLNDMYPKAQKHVLVLARSGGLDCLSDVQNEHLSVLKRMHAVGLKWAEKFLSENSSLVFRLGYHSVPSMRQLHLHVISQDFDSKHLKNKKHWNSFNTAFFRDSVDIIDEVSIHGKATLKDDDKLLSMELRCHKCKSAHPNIPRLKSHISSCQAPFPANLLENGRLVGACTK* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0704 747 ProSitePatterns HIT domain signature. 636 654 IPR019808 -
Mtr1g0704 747 PANTHER APRATAXIN-RELATED 12 744 - -
Mtr1g0704 747 SMART YBR022w_8 340 492 IPR002589 -
Mtr1g0704 747 ProSiteProfiles Macro domain profile. 328 528 IPR002589 -
Mtr1g0704 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 158 IPR027417 -
Mtr1g0704 747 SUPERFAMILY Macro domain-like 322 461 IPR043472 -
Mtr1g0704 747 Gene3D - 549 730 IPR036265 -
Mtr1g0704 747 SUPERFAMILY HIT-like 557 711 IPR036265 -
Mtr1g0704 747 Gene3D - 2 172 IPR027417 -
Mtr1g0704 747 Pfam Scavenger mRNA decapping enzyme C-term binding 562 667 - -
Mtr1g0704 747 MobiDBLite consensus disorder prediction 493 541 - -
Mtr1g0704 747 Pfam AAA domain 15 142 - -
Mtr1g0704 747 Pfam Macro domain 363 440 IPR002589 -
Mtr1g0704 747 Gene3D Leucine Aminopeptidase, subunit E, domain 1 261 333 IPR043472 -
Mtr1g0704 747 Gene3D Leucine Aminopeptidase, subunit E, domain 1 334 471 IPR043472 -
Mtr1g0704 747 PANTHER APRATAXIN 12 744 IPR026963 GO:0003677|GO:0006281|GO:0033699
Mtr1g0704 747 MobiDBLite consensus disorder prediction 480 541 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0704 11 743 C2H2 Transcription Factor Family AT5G01310 57.973 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0704 K10863 - gmx:100786762 1164.44