Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0702 ATGAGTAGGCCAAAGTTTCCTATTAACATTCTGTTTATTGGTCATGTCGACTCCGGGAAGTCAACGACGGCTGGTCATTTGATCTACAAGCTTGGAGGTATTGAAAAGGATGTCATCGATAGATTTGAGAAAGAAGCTGCTGAGATGAACAGGCATTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAAAGAGGTATCACAATTGACATTTCTCTGTGGAAGTTTGAGACAACCAACTTCCGCTGCACTCTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATCACTGGAGCGTCCGAAGCTGACTGTGCTGTTCTTATCATTGATTCTACACTTGGTGGTTTTGACGCTGGTTTTTGTAAGAATGGTCAGACCACTGAACATGTTCAACTTGCCTTCGCTCTTGGTGTTTCACAAATGATCTGCTGTTGTAACAAGATGGATGCCACTACACCCAAATACTCCAAGGATAGGTATGAACAAATTGTGAGTCAAATTTCACCCTTTTTGAGTGAGGTTGGCTATAACCTAGGTAAAATTCCTTTTATCCCTATCTCTGGTTACGAGGGAGATAACATCATTGAGCGCTCTTCTAACCTTGATTGGTACACGGGTCCCACCCTTCTTGAAGCTCTTGACCAATTCAGAAGGCCTAAGAGGTTAATATTCAGGCCTCTCCGATTACCACTTCAAGATGTCTACAAGATTGGAGGAATTGGAATTGTGCCTGTGGGACGCGTTGAGTCTGGTATCTTGAAACCTGGAATGGTGCTGACTTTTGCCCCAACTGGGCTCCAAACTGAAGTGAAGTCTGTGGAGATGCACCATGAAGCTCTCACTCGGGCTCTTCCTGGTGACATTGTGGGATTTAACGTTACGAATGTGTCTGCTAAGGATCTCAGGCGAGGCTATGTTGCCTCAAACTCCAAGCGTGGCCCAGCTATGGAGGCTGCTGAATTTACATCTCATGTTATCATCTTGAATCATCCTGGCCAGATTAGAAATGGCTATACACCTATTCTCGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCCAAGCTTGTTAGCAAGTTTGACAGGAATACTAATGTTGAATTTGAGAAGGAGCCCAAATTCTTGAAGAATGGCGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTAGAGACTTTTACTGCATATCCTTCACTTGGTCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTATTGGAGTCATCAAGGATGTGAAGAATAAGGATCCTGTAAGGTCAAACTATGGCTATTCGAGTCATGAAGGATGGGAAGAACAAGTATCCTGCATCATGGAGGAGGGATGA 1377 0.4466 MSRPKFPINILFIGHVDSGKSTTAGHLIYKLGGIEKDVIDRFEKEAAEMNRHSFKYAWVLDKLKAERERGITIDISLWKFETTNFRCTLIDAPGHRDFIKNMITGASEADCAVLIIDSTLGGFDAGFCKNGQTTEHVQLAFALGVSQMICCCNKMDATTPKYSKDRYEQIVSQISPFLSEVGYNLGKIPFIPISGYEGDNIIERSSNLDWYTGPTLLEALDQFRRPKRLIFRPLRLPLQDVYKIGGIGIVPVGRVESGILKPGMVLTFAPTGLQTEVKSVEMHHEALTRALPGDIVGFNVTNVSAKDLRRGYVASNSKRGPAMEAAEFTSHVIILNHPGQIRNGYTPILDCHTSHIAVKFAKLVSKFDRNTNVEFEKEPKFLKNGDAGIIKMIPTKPMVVETFTAYPSLGRFAVRDMRQTVAIGVIKDVKNKDPVRSNYGYSSHEGWEEQVSCIMEEG* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0702 458 PANTHER ELONGATION FACTOR 1-ALPHA 1 438 - -
Mtr1g0702 458 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mtr1g0702 458 CDD EF1_alpha_II 232 319 - -
Mtr1g0702 458 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mtr1g0702 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 248 IPR027417 -
Mtr1g0702 458 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 430 IPR009001 -
Mtr1g0702 458 Pfam Elongation factor Tu GTP binding domain 8 222 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 Pfam Elongation factor Tu C-terminal domain 323 429 IPR004160 -
Mtr1g0702 458 Gene3D Translation factors 323 430 - -
Mtr1g0702 458 Gene3D Translation factors 230 316 - -
Mtr1g0702 458 Gene3D - 1 226 IPR027417 -
Mtr1g0702 458 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 227 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 PANTHER TRANSLATION FACTOR 1 438 - -
Mtr1g0702 458 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Mtr1g0702 458 CDD EF1_alpha_III 323 426 - -
Mtr1g0702 458 CDD EF1_alpha 9 227 - -
Mtr1g0702 458 SUPERFAMILY Translation proteins 233 321 IPR009000 -
Mtr1g0702 458 Pfam Elongation factor Tu domain 2 250 313 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0702 Mtr-Chr1 7963883 7965444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0702 1 434 Eukaryotic Initiation Factors Gene Family AT5G60390 77.189 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0702 K03231 - gmx:100801611 693.345