Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0691 ATGTGCGTGATCCAAACGAGAAAGAGATCGAAGTTGCCGTCGAAAAGAAAAACAGTAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGAGGTCATAGAGACTTGATCTTGGGATTTAACACCTTTTTGCCAAAGGGCCATGAGATTACCCTTTGTCTGAGGATGAGCAACCTCAACAAGTCTAACACCCTGGTCTACAAAGAGGTTGCTGCACTCTACCAAAACCACCCGGATGCTGCATCTACTCATGCTTTTGCTCGGAATTCCATGTTTCGTGATAGGAGCTCTGCAATGCCAACACTACGGCGAGTGCAGGTTGAAAAGGTTTGTCTTCAGTTCTTATGTCCCTTTCTGTAG 372 0.4435 MCVIQTRKRSKLPSKRKTVRVDTDGVIERVKELFRGHRDLILGFNTFLPKGHEITLCLRMSNLNKSNTLVYKEVAALYQNHPDAASTHAFARNSMFRDRSSAMPTLRRVQVEKVCLQFLCPFL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0691 123 ProSiteProfiles PAH domain profile. 1 51 IPR003822 GO:0006355
Mtr1g0691 123 Pfam Paired amphipathic helix repeat 22 48 IPR003822 GO:0006355
Mtr1g0691 123 SUPERFAMILY PAH2 domain 11 50 IPR036600 GO:0006355
Mtr1g0691 123 PANTHER SIN3B-RELATED 17 96 IPR039774 GO:0003714
Mtr1g0691 123 Gene3D Paired amphipathic helix 2 51 IPR036600 GO:0006355
Mtr1g0691 123 PANTHER SIN3A, ISOFORM G 17 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0691 Mtr-Chr1 7744018 7747067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0691 21 56 WRKY Transcription Factor Family AT4G12020 63.889 1.87e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g0691 PAH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0691 K11644 - mtr:MTR_1g023820 249.595