Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0683 ATGGACGACCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGTGGTTGATGCAACAACATCAGCATCAACATCCTTCCATGAAGCAGATTATGTCAATCATGGCCGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCTGAGAAAAAAGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCAATAGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAATTGCACACAACTGATGCCCTCCCAGCAGCCCCCGTTTCTTTAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGACCAAAGGAAAGCAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGACGATTTAAACAAGACAATGTTTGCCAACAACAAAGAACTTGAATGGAAGAGTAGTGAGGAAATTATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAATCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTAAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCTGCAGTGCCAAACAAAAGGCATGCTCGAGTAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCCGAAGGGCATGATCTCTCACACCCAGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG 1023 0.4438 MDDRENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPVSLEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEIINGDDDLNKQLAISKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0683 340 MobiDBLite consensus disorder prediction 160 193 - -
Mtr1g0683 340 MobiDBLite consensus disorder prediction 147 193 - -
Mtr1g0683 340 PANTHER - 3 340 IPR010409 -
Mtr1g0683 340 Coils Coil 52 72 - -
Mtr1g0683 340 PANTHER PROTEIN BASIC PENTACYSTEINE6 3 340 - -
Mtr1g0683 340 Pfam GAGA binding protein-like family 1 340 IPR010409 -
Mtr1g0683 340 MobiDBLite consensus disorder prediction 17 33 - -
Mtr1g0683 340 MobiDBLite consensus disorder prediction 1 33 - -
Mtr1g0683 340 SMART GAGA_bind_2 1 340 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0683 Mtr-Chr1 7670626 7674297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0683 66 340 BBR or BPC Transcription factor family AT5G42520 63.356 3.13e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Mtr1g0683 GAGA_bind 1.2e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0683 - - mtr:MTR_1g023660 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0683 1 7670626 7674297 Mtr1g0683 1 7670626 7674297 ECH