Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0675 ATGGATGTGGAACATGTGAAGGCGAAGATCTCAGTTTGGTGGAACATTAACGACTGTAAATTTCCAACAAACCCCGAGTATGTTAAAACCATTGCTAACAACATTCGCTTAGCTCTGTCGAAAGCAAACCTTCTTGGAGAACTTTCCATTTCAGCTTACGGAGACACCAATCTCATCGCCAGTGAAATTCTAAACGCGCTTTCCTCCACAGGCATCTCCGTCCATCACGTCACTAGCGTCTCTGATAGTTACTTTGATGAATGTTACAAAAAGATTATTACTGATATGTCACTGTGGGCTCTAGGTAACCCTAATGCTAATGTTTTGTTGATATTTGCTAATGGAGGTAATGCTGTACCAATTATCTCAAGGGCTCTTGTTAAACTTTCTATGAAAAACCACAACATTCTCCTTGCTATACCATCACAAGTTGATGCATCCCTCACTGACACAGCCAATATCGTTTGGCTCTGGCCCGCACTCTTTTCTGGTGAGGGCCCTATGTGCATTGAAGAGTGGTCGTCGGAAGAACAAGTGCAGAAGCAAGCACCAGGCGGGGAAAGTGACGTCTAG 573 0.438 MDVEHVKAKISVWWNINDCKFPTNPEYVKTIANNIRLALSKANLLGELSISAYGDTNLIASEILNALSSTGISVHHVTSVSDSYFDECYKKIITDMSLWALGNPNANVLLIFANGGNAVPIISRALVKLSMKNHNILLAIPSQVDASLTDTANIVWLWPALFSGEGPMCIEEWSSEEQVQKQAPGGESDV* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0675 190 CDD PIN_limkain_b1_N_like 9 141 - -
Mtr1g0675 190 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 3 182 - -
Mtr1g0675 190 Pfam NYN domain 9 147 IPR021139 GO:0004540
Mtr1g0675 190 PANTHER LIMKAIN B LKAP 3 182 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0675 Mtr-Chr1 7573034 7573710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0675 2 174 C2H2 Transcription Factor Family AT5G61190 43.103 3.64e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0675 - K17573 mtr:MTR_1g023460 384.415