Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0668 ATGAAGATCCAGTGTGATGTATGCAACAAAAATGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCTTATGTATCGACTGTGACCACCGTGTCCACCACGCCAACAAACTGGCTTCCAAACACCACCGTCTCGCTCTTCATAACCCAACTCCCAAACAACACCCTCTCTGCGATATTTGTCAGGAGAGAAGAGCTTTTGTGTTATGTAAACAAGACAGAGCAATTCTATGCAAAGATTGTGATTCATCTATTCATTCAGTGAATGAACTTACACAAAAACATGATAGATTTCTTCTTACTGGTATTAAGATTTCAACTACAAACTCATCTTCTTCATCTTCATCATCAACACCTTCTTCTGCTACTACCAAGTCAAATCATATTCCTTCTTCTTCTTTGATTGAAAAATCTACTACTCCTTCACCAACATCTATGGAAGAAGGAAGTGGTGGTTCTACTATATCTCAATACTTGATTGAGACTCTACCTGGTTGGCAAGTTGATGATTTTCTTGATTCTTCTTCTGTTCCCTTTGCTTTCTCCAAGGGTGATGAATTGTTTAATGCTGGTATTGAAGAGAATCTTGATTCATTCTTTCCCAATAATAATATGGGGATATGGGTTCCTCAAGCACCACCACCTTCTCTATATTCATCTTCACAGATAATGATGGGGCAGAGTGAGACTACAAAGAAGGGGAGCAACAACAAAAGCACCATCAACAAATCAAGGTTGAGGGATGATCATGATAGTAATATTTTCACAGTTCCCCAGATTAGTCCTGTTGCTAATTCCAAGAGAACAAGATATCTATGGTAG 822 0.3929 MKIQCDVCNKNEASLFCTADEAALCIDCDHRVHHANKLASKHHRLALHNPTPKQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTQKHDRFLLTGIKISTTNSSSSSSSSTPSSATTKSNHIPSSSLIEKSTTPSPTSMEEGSGGSTISQYLIETLPGWQVDDFLDSSSVPFAFSKGDELFNAGIEENLDSFFPNNNMGIWVPQAPPPSLYSSSQIMMGQSETTKKGSNNKSTINKSRLRDDHDSNIFTVPQISPVANSKRTRYLW* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0668 273 Gene3D Classic Zinc Finger 1 97 - -
Mtr1g0668 273 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 271 - -
Mtr1g0668 273 SMART bboxneu5 53 100 IPR000315 GO:0008270
Mtr1g0668 273 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr1g0668 273 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Mtr1g0668 273 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Mtr1g0668 273 MobiDBLite consensus disorder prediction 107 152 - -
Mtr1g0668 273 CDD Bbox1_BBX-like 57 100 - -
Mtr1g0668 273 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Mtr1g0668 273 CDD Bbox1_BBX-like 5 47 - -
Mtr1g0668 273 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr1g0668 273 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0668 Mtr-Chr1 7519615 7521536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0668 1 273 C2C2-CO-like Transcription Factor Family AT1G75540 42.151 2.25e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mtr1g0668 zf-B_box 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0668 - - lja:Lj5g3v0165540.1 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0668 1 7519615 7521536 Mtr1g0668 1 7519615 7521536 ECH
Mtr1g0668 1 7519615 7521536 Mtr3g4427 3 58283074 58284598 PCT