Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0665 ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCAAAGTGATACCGACGATGAACCCACTGATATTGATGACGAACCCAGTGATACTGAACCCGCTCCAACAGATCCAAACGGTAAAAGCAAATACTTGGCTGGTGGTAATGCTGATGACAGCGACGATGATGATGGCCAAAAGCGTGTTGTTAAGTCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTTGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCCAATCTCTACATCAAGGCGCTCGTAATGCTTGAAGATTTCCTCGCTCAGGCTTCTGCTAATAAGGATGCCAAAAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTAAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGCAGGGAGAGTCCTGAGAGTGAGGGCGAAAAGGATGAAGACGATGAAGACTCTGACGAATATGAGTCCGATGATGAGATGATTGAACCTGATCAGCTCAGGAAGCCGGAGCCTGTATCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAACTTAGCAAGAAAGACAGGCTTTTGGAAAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACGGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGCCATATGCCCATAAGTGTGTGGAAAAAGTGTGTGCAGAACATGCTGGTCATTCTCGACATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAGCTAGACGAGAATGAAACTAAGAAAGGGGATGACTATAACGGACCCATTAATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGGGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCACATGAGGTTTACGAAGCAACGAGAAAATTGGCTGAGATGACAGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGCCAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCTGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATATAAATACGGAGATGAGCGCACTAAAGCACGCGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTAGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGTGCTTTTCGGGCTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCAAAGCGTAAGATCATCAGTAAGAATTTCCGACGCTTGCTTGAGGTCAGCGAGAAACAAACATTCACCGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGACGTCTGGAAATTTGTGAAAAATCGAGACGCCGTGCTAGAAATGCTTAAGGACAAAATCAAGGAAGAGGCACTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTGAGCGTGGTTCAGCTCACAAATTTTTTCGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGGTCAATGAGGAGCTTCATGCAAGCTGGGATCAACCAACTGGGTGCATTATTTTCCGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGGAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGCGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGTGGACGTACGGGATACGGTGGAGGAAGAGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGTGGCTATTCTAGAGGACGGGGAACGGGTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCAGCATTGAGGGGACCCCACGGAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA 2808 0.4541 MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDEDDEDSDEYESDDEMIEPDQLRKPEPVSDSETSELGNDRPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYNGPINVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEEPKGFEDTRIPAPFVVTLELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRAGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSVVQLTNFFDLSLPRVHSIVSRMMVNEELHASWDQPTGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTGGGGYQNSGRTQGGSALRGPHGDTSTRMVSLRGVRA* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0665 935 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 934 - -
Mtr1g0665 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 3 875 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr1g0665 935 MobiDBLite consensus disorder prediction 217 233 - -
Mtr1g0665 935 MobiDBLite consensus disorder prediction 171 233 - -
Mtr1g0665 935 Pfam PCI domain 664 792 IPR000717 -
Mtr1g0665 935 SMART PINT_4 725 813 IPR000717 -
Mtr1g0665 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 725 813 - -
Mtr1g0665 935 MobiDBLite consensus disorder prediction 135 156 - -
Mtr1g0665 935 MobiDBLite consensus disorder prediction 46 66 - -
Mtr1g0665 935 ProSiteProfiles PCI domain profile. 624 796 IPR000717 -
Mtr1g0665 935 MobiDBLite consensus disorder prediction 823 935 - -
Mtr1g0665 935 Coils Coil 147 174 - -
Mtr1g0665 935 MobiDBLite consensus disorder prediction 853 873 - -
Mtr1g0665 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 934 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr1g0665 935 MobiDBLite consensus disorder prediction 14 30 - -
Mtr1g0665 935 MobiDBLite consensus disorder prediction 178 197 - -
Mtr1g0665 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 656 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr1g0665 935 MobiDBLite consensus disorder prediction 1 66 - -
Mtr1g0665 935 SUPERFAMILY "Winged helix" DNA-binding domain 720 795 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0665 Mtr-Chr1 7457678 7463346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0665 1 935 Eukaryotic Initiation Factors Gene Family AT3G56150 66.208 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0665 K03252 - gmx:100805203 1398.65