Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0628 ATGAGTTGGAGAATTTTTCTTTCTTCTTCAAAACAAACCCTAACCAAACTCAAATCAATCTCAAATTCCCAATTCTCCAAAACCCTCTTCAAACAATTACCCATTTCATCATCAATCATCACTCACCGAACTCTCCATTTTCATTCACATGAATCCAGCACTTCACTGATCGACCCATCACTCAAAACCCACTTAAACGACACCACAATCCACCAAAACGACGATGAAGAAATCACCAACGAGTTTCTCTCTCGATTCGCTTGGATAATGAGGAAAAAAGTTAAAGAAGTTTATCCCGAATGCGATAAAAGTACCGTCGATGCAATGCTGCTTGTTATTGTTGAAAGGGTTGTTTCAGAAATGGAAAAGGGTAGTGGGAGTGATGAAAATGTTGCGTTTTCGCGATTTGATTCGGTGGATTTTAGTGAGGATTTATGGAGGACTGTGTGGGAGGTTAGTAATAAGGTTTTGGTTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAAGGGTTTTTGCAGTGTGATGAAGTGAAAGAGATGTGTAGATTTGCTGGTGAAGTTGGGATTCGGGGCGATTTGCTTAGAGAGCTTAGGTTTAAATGGGCACGTGAGAAAATGGAGGAACATGAGTTTTATGAGGATTTGGAGAAAATGAAGAAAGAGACTCAGATTGTTGATGAAGAAATAAAAAATGAATCCGAAGAAAATGTCGATGTTGATGCTGGTGTTCGTGTTGACGGTAGTGTTGAGGAGAAGAAGGTTGTTGGGCTTCCTAAGAGGAAAGGGAAAATTAGGTTTAAGATTTATGGGCTTGATTTATCTGATCCTAAATGGGAACAAGTGGCTGATAAGATTCATGAGGCGGGAGAAGTTATTTGGCCGAAGGAGGTGAAGCCGATAACCGGGAAATGCAAACAAGTTACCGAGAAAATTCTGTCCTTGAAGGAGAAGGATGGAGATGATAGTTTGTTGACCCTGTTGGCTGAATGGGTAGAGCTTCTTCAGCCTACTAGGGTGGATTGGATCAATTTGCTTGAAAGGTTGAAATCTCAGAATTATCCTTTATACTTCAAGGTGGCAGAAATGGTATTAACTGAAGATTCTTTCCAAGCAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACTGAGAGGATGCTTAAGAAGATGAATGAAAATGGTTTACAACCAGATGCTTCGATAGCCAATGTGATGGTCCACATGTACAGCAAGATAGGTAATCTTGAACGTGCAGAAGAAGCATTTAAAATCTTGAGTAGCCTGGGTTTCCAACCAGACACGAGAGTCTACAACTCAATGATCATGGCCTATATCAATGCTGGTGAACCTACAAAGGGCGAAACACTGATGAGGCAGATGGAGACGAGAGATATTAAGCCTACAAAGGAAATATACATGTCATTGCTCCGATATTATTCTCAACGTGGCGACATTGATCGTGCCTCACGAACTTCATCATCTCTGCAGTTTGCAGGACACCCGCAGACTATGGAAACATGCACCCTGCTTATTGAAGCAGCAGCAGGTGCAGATGACCTAGATAAGGTAATCTTCAATTTTGACCATATGGTAAAACTTGGGCATAAGCCTGATGATAGATGCACTGCTGCCATGATTCGTGCTTATGAGAAAACAAATTTATTGGACAAGGCATTGGATCTTCTTATGACGTTAGAGAAGGATGGGTTTGAGCCTGGGATTGTGACTTATTCTGTTCTTCTGGACTGGATGGCTAAAATGCAGCTTGTCGATGAGGCTGAACAGATTTTAAACAAAATTGCTCTGCTGGGCGAGGCTCCTCCTTTTAGGGTTCAAGTTAGTCTTTGTGATATGTATGCAAGGACTAAAATGGAGAAAAAGGCCCTTCAAACACTAGGCGTTCTGATAGCCAGGAAGGAAGAGTTACGACCAAATGAGTTTGAGAGGATTATATCTGGCCTTATCGATGGTGGGTTTTTGCGGGATGCAGAAAGAATGCATGGGATTATGGAGGCACAGGGTTTCAAACCATCTCAGCAGCTTAATTTAGCCCTTAAATCTGGCCGCTTACCATTAAGTATGAGGTAG 2118 0.4122 MSWRIFLSSSKQTLTKLKSISNSQFSKTLFKQLPISSSIITHRTLHFHSHESSTSLIDPSLKTHLNDTTIHQNDDEEITNEFLSRFAWIMRKKVKEVYPECDKSTVDAMLLVIVERVVSEMEKGSGSDENVAFSRFDSVDFSEDLWRTVWEVSNKVLVDMNKERKKEKMKGFLQCDEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEDLEKMKKETQIVDEEIKNESEENVDVDAGVRVDGSVEEKKVVGLPKRKGKIRFKIYGLDLSDPKWEQVADKIHEAGEVIWPKEVKPITGKCKQVTEKILSLKEKDGDDSLLTLLAEWVELLQPTRVDWINLLERLKSQNYPLYFKVAEMVLTEDSFQANISDYSRLIDMYAKENRIDDTERMLKKMNENGLQPDASIANVMVHMYSKIGNLERAEEAFKILSSLGFQPDTRVYNSMIMAYINAGEPTKGETLMRQMETRDIKPTKEIYMSLLRYYSQRGDIDRASRTSSSLQFAGHPQTMETCTLLIEAAAGADDLDKVIFNFDHMVKLGHKPDDRCTAAMIRAYEKTNLLDKALDLLMTLEKDGFEPGIVTYSVLLDWMAKMQLVDEAEQILNKIALLGEAPPFRVQVSLCDMYARTKMEKKALQTLGVLIARKEELRPNEFERIISGLIDGGFLRDAERMHGIMEAQGFKPSQQLNLALKSGRLPLSMR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0628 705 Coils Coil 383 403 - -
Mtr1g0628 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Mtr1g0628 705 Pfam Pentacotripeptide-repeat region of PRORP 385 497 IPR033443 -
Mtr1g0628 705 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Mtr1g0628 705 TIGRFAM PPR: pentatricopeptide repeat domain 446 478 IPR002885 -
Mtr1g0628 705 TIGRFAM PPR: pentatricopeptide repeat domain 413 444 IPR002885 -
Mtr1g0628 705 Gene3D Tetratricopeptide repeat domain 508 620 IPR011990 GO:0005515
Mtr1g0628 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Mtr1g0628 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Mtr1g0628 705 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 14 699 - -
Mtr1g0628 705 Pfam Pentatricopeptide repeat domain 538 594 IPR002885 -
Mtr1g0628 705 Coils Coil 213 236 - -
Mtr1g0628 705 PANTHER OS07G0661900 PROTEIN 14 699 IPR044657 -
Mtr1g0628 705 Gene3D Tetratricopeptide repeat domain 349 507 IPR011990 GO:0005515
Mtr1g0628 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0628 Mtr-Chr1 7150427 7155870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0628 340 688 Glycosyltransferase AT1G05670 23.209 5.68e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0628 - - gmx:100794017 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0628 1 7150427 7155870 Mtr1g0628 1 7150427 7155870 ECH