Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0626 ATGACGGACGGTCATCTCTTTAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGTAAATCAATTGATGTTGACAAGGCAGACATAACGGGAGTAACATGGATGAAGGTTCCAAAGACAAATCAACTCGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGATGTGATGTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCATGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATGAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAATTACACTTGTCATTTTTGCGGCTTCAGGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGGAAAGGACAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCCGGGGGCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCACTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATCAGACTCAAATCTGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCAGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAACGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCTATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA 1932 0.4213 MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDEIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0626 643 MobiDBLite consensus disorder prediction 598 643 - -
Mtr1g0626 643 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Mtr1g0626 643 Pfam HMG (high mobility group) box 558 626 IPR009071 -
Mtr1g0626 643 MobiDBLite consensus disorder prediction 598 623 - -
Mtr1g0626 643 Gene3D - 1 93 IPR011993 -
Mtr1g0626 643 Gene3D - 95 179 IPR038167 -
Mtr1g0626 643 SMART Rtt106_2 348 441 IPR013719 -
Mtr1g0626 643 MobiDBLite consensus disorder prediction 469 566 - -
Mtr1g0626 643 MobiDBLite consensus disorder prediction 626 643 - -
Mtr1g0626 643 Gene3D - 199 338 - -
Mtr1g0626 643 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Mtr1g0626 643 Pfam POB3-like N-terminal PH domain 7 97 IPR035417 -
Mtr1g0626 643 SUPERFAMILY PH domain-like 206 440 - -
Mtr1g0626 643 MobiDBLite consensus disorder prediction 508 549 - -
Mtr1g0626 643 CDD HMGB-UBF_HMG-box 558 623 - -
Mtr1g0626 643 CDD PH2_SSRP1-like 342 441 - -
Mtr1g0626 643 CDD PH1_SSRP1-like 207 340 - -
Mtr1g0626 643 Coils Coil 608 628 - -
Mtr1g0626 643 Gene3D High mobility group box domain 543 639 IPR036910 -
Mtr1g0626 643 Gene3D - 339 447 IPR011993 -
Mtr1g0626 643 SMART hmgende2 557 627 IPR009071 -
Mtr1g0626 643 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 641 - -
Mtr1g0626 643 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 641 - -
Mtr1g0626 643 SUPERFAMILY HMG-box 549 634 IPR036910 -
Mtr1g0626 643 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 558 626 IPR009071 -
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Mtr1g0626 643 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0626 Mtr-Chr1 7139223 7145198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0626 554 625 ARID Transcription Factor Family AT1G04880 43.056 3.96e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr1g0626 Rtt106 1.3e-19 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0626 K09272 - gmx:100805034 1126.69