Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0622 ATGAGTCAGGCAAAGAGACTTGAAGCCTTGAATGCGTTCAAGTCTGGGAACTGCAAAATTCTTCTTTGTAATGACTTAGCTAGCAGGGGACTAGATATTCCAGCAGTAGATACGGTGATTAACTACGACATACCCGACGACCCCAGAGATTATATGCACCATGTGGGACAGGCTGCTCCTACTGGAGTTGCCATTTCCTTTGTGAGCCCAAATGAGGCGAGATGGTTTGAAATGATAGAGACACATATAGGGAAGAAGCTACCCGTGTATCAGGCACAAATTGAGGAAGTACTTCGTTTCAGTAACCGTGTTAGTGTGGCCAAAAGGTTAGCGGATGAGGTCCGTAAGATCGAAAGTGCGTTTTCAAGTAATCATGGGAAGGTGTTTTATATATCTCCCGAAGTGTTGGAGAAACTGAAGCAGCAACAGAAGGAAATTATCTCGGCAACCGAAAACTCTGAAAGTTCAGCTGATGGTATCGAAACAAATGATGGAGTTGCTCACAATGTTGAGCGAGTCTTGCGCTGCAGATTCTGA 537 0.4469 MSQAKRLEALNAFKSGNCKILLCNDLASRGLDIPAVDTVINYDIPDDPRDYMHHVGQAAPTGVAISFVSPNEARWFEMIETHIGKKLPVYQAQIEEVLRFSNRVSVAKRLADEVRKIESAFSSNHGKVFYISPEVLEKLKQQQKEIISATENSESSADGIETNDGVAHNVERVLRCRF* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0622 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 96 IPR027417 -
Mtr1g0622 178 CDD SF2_C_DEAD 1 68 - -
Mtr1g0622 178 Gene3D - 1 171 IPR027417 -
Mtr1g0622 178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 98 IPR001650 -
Mtr1g0622 178 PANTHER RNA HELICASE 1 113 - -
Mtr1g0622 178 Pfam Helicase conserved C-terminal domain 1 58 IPR001650 -
Mtr1g0622 178 PANTHER BNAC02G41920D PROTEIN 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0622 Mtr-Chr1 7104627 7112869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0622 1 69 Eukaryotic Initiation Factors Gene Family AT5G11170 47.222 3.40e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0622 K14777 - mtr:MTR_1g023070 136.346