Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0582 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCTTACTCAAGCAATAATAATAACAGTGATGCCGGCAATTTTGAATGCAACATTTGTTTTGACTTAGCACAAGATCCTATTATTACTTTGTGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGTAAAGCGATGATTGAGGAGGAGAAATTGGTTCCTTTATATGGGAGAGGAAAGACGTCAACCGATCCGAGATCGAAATCTGTTCCTGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGACCTGAAACTGCACCTCCACCTGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCACAGGTGGATTAGGTGGATTTGCACCAGCAACAACTGCAAGATTTGGGAATTTCACATTTGCTGCAGGATTTGGTGGATTGGGGGGATTTATACCATCCTTATTTAACTTTCAGTTGCATGGTTTTCACGGTGGGGCCATGTATGGTGGAGCTGCTGGTTTCCCTTACGGGTTTTCTAATGCATTTCACGGTGGCCATGTTCATAGATATCCTCTACACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGATGTTTGTTATTTTTTGTGTGGTACTTGCTTTACTTTGGCAATAG 699 0.4349 MASGFGESTSRSPPSPPYSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSVPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFTGGLGGFAPATTARFGNFTFAAGFGGLGGFIPSLFNFQLHGFHGGAMYGGAAGFPYGFSNAFHGGHVHRYPLHTGQGQQDYYLKRLLMFVIFCVVLALLWQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0582 232 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Mtr1g0582 232 MobiDBLite consensus disorder prediction 86 123 - -
Mtr1g0582 232 PANTHER OS12G0636000 PROTEIN 2 232 - -
Mtr1g0582 232 SUPERFAMILY RING/U-box 29 85 - -
Mtr1g0582 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Mtr1g0582 232 CDD RING-HC_AtRMA_like 30 74 - -
Mtr1g0582 232 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Mtr1g0582 232 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g0582 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Mtr1g0582 232 SMART ring_2 32 72 IPR001841 -
Mtr1g0582 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0582 Mtr-Chr1 6715874 6717888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0582 30 215 C3H Transcription Factor Family AT1G19310 67.347 8.73e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0582 K10666 - gmx:100527488 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0582 1 6715874 6717888 Mtr1g0582 1 6715874 6717888 ECH