Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0566 ATGTCTTCATTTCTTTGTTCTCTCCTTCTCACATTCATTTTCACATCTCAAATCAGCACAGCTACCACTGACGCTACAGGAAAATTCCGATACATTTGTGATCAAGGTAACGATGATGGTAACTACACAACCAACAGCACCTACCACACAAACCTCAAAACCCTTCTATCCACTCTCACTTCCAACAAAGATATTAACTACGGTTTCTATAATTCCTCTTATGGCGTAAACACCGACAAAGTAAACGCTATTGGACTGTGTAGAGGAGATGTCAAACCCGATGATTGTCAAAATTGCCTCCAAAATTCAACTGCCCTTCTAACACAACTTTGTCAAAATCGAAAAGAAGCAATTGGATGGTACGACGATGAAAAATGCATGTTGCGTTCCTCACACCGTTTAATATTTGGTATCAATGAAATGGGACCTGCCATGATTGCATGGAATTTGCAGAACGCAACAAAGGAAGTCGAAGATGAATTTGATAAAGGGCTGAAAAATTTGTTGTATAATTTAAAAAATTTAGCTGCATCGGGGGAAAGTGACCTTAAATATGCTGTAGGAAGTGATGTGATTGGTCCAAATAATAATCAAACCATATTTGCTCTTGTTCAATGCACACCTGATTTGTCTGAAACATTGTGTGATGAATGTTTGGATAAATCTATCAAAGAAATCCCAAATTGTTGTGACAATAGAATAGGTATAGGTGGTAGATTTCTTAGACCCAGTTGTTATTTGAGATATGAAACCAATTCACTTTTCTATCAACAAACTCAAGATTCACCTTCATCATCGTCATCATCACCATCACCAACACCTTCACCAGCATCAGTGCCATCATTCTCAGCTCCTCCTCCATTTGCAGAAAACACTACTTCCTCTCCAGGAAAAAGCAACAACAGTACTACCATAGGTATCGCTCTAGGGGTACCAATTGCTATTGTTGTTATGGTCTTCATTTTTATCTGCATCTATTTAAGACTAAGAAAGCCAAAGAAAACGTGTGAAGAAGTTCAAGAAGAAGAAGAAGATGACATAATTGATATTACTACCGAGCAACTGCAATTAGACTTCAACACCATACGTATTGCTACAAATGATTTCTCAGATTCTGATAAACTTGGAAAAGGCGGATTTGGGGCTGTTTACAAAGGTAGGCTCTTCAATGGACAAGAGGTTGCTGTCAAAAGGTTATCAATGAATTCTGGACAAGGAGATTCAGAGTTTAAGAATGAAGTGTTTTTAGTTGCTAAACTTCAACACAGAAATCTAGTTAGATTACTCGGTTTTTGCCTAGAAGGAAGAGAAAGACTTCTTGTATATGAGTTTGTTTGTAATAAAAGTCTTGATTACTTTATTTTTGATCAAGCAAAGAGAGCGCAATTAAATTGGGGAAAGCGCTACCTAATCATTTTAGGTATTGCTCGAGGCATTCTATACCTTCACCAGGATTCTCGATTTCGTGTTATTCATAGAGATCTCAAAGCAAGTAATATTCTCTTGGATGAACATATGAATCCTAAGATAGCTGATTTTGGCATGGCAAGACTTTTTGGTGTTGACCAAACCCAGGAAAACACAAATAGAATTGTGGGAACTTACGGATATATGGCACCTGAGTATGTAATGCACGGACAATTTTCGGTAAAATCAGATGTCTTCAGTTTTGGTATATTGGTTCTTGAAATTGTAAGTGGTGCTAAAAATAGTAGCATTCGTGATGGGGAGAATACAGAATATCTCTCAAGCTTTGCATGGAGAAATTGGAGAGAGGGGACTGCAACAAATATCATAGACTCGACATTAAACAATGATTCACGAAATGAAATACTAAGATGTATCCATATTGGATTACTTTGTGTTCAAGAGAATATAGTAAATAGACCAACCATGGCTTCTATTGTAGTGATGCTTAATAGCGACTCTGTTACTCTTCCAATGCCTTTTGAAGATCTGAAATCATTAAGTGATAGTTCAGCGAAGGAATCGGTCAATGGAGCTTCAAATACAGAGCCTTTTCCTCGCTAG 2031 0.3737 MSSFLCSLLLTFIFTSQISTATTDATGKFRYICDQGNDDGNYTTNSTYHTNLKTLLSTLTSNKDINYGFYNSSYGVNTDKVNAIGLCRGDVKPDDCQNCLQNSTALLTQLCQNRKEAIGWYDDEKCMLRSSHRLIFGINEMGPAMIAWNLQNATKEVEDEFDKGLKNLLYNLKNLAASGESDLKYAVGSDVIGPNNNQTIFALVQCTPDLSETLCDECLDKSIKEIPNCCDNRIGIGGRFLRPSCYLRYETNSLFYQQTQDSPSSSSSSPSPTPSPASVPSFSAPPPFAENTTSSPGKSNNSTTIGIALGVPIAIVVMVFIFICIYLRLRKPKKTCEEVQEEEEDDIIDITTEQLQLDFNTIRIATNDFSDSDKLGKGGFGAVYKGRLFNGQEVAVKRLSMNSGQGDSEFKNEVFLVAKLQHRNLVRLLGFCLEGRERLLVYEFVCNKSLDYFIFDQAKRAQLNWGKRYLIILGIARGILYLHQDSRFRVIHRDLKASNILLDEHMNPKIADFGMARLFGVDQTQENTNRIVGTYGYMAPEYVMHGQFSVKSDVFSFGILVLEIVSGAKNSSIRDGENTEYLSSFAWRNWREGTATNIIDSTLNNDSRNEILRCIHIGLLCVQENIVNRPTMASIVVMLNSDSVTLPMPFEDLKSLSDSSAKESVNGASNTEPFPR* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0566 676 MobiDBLite consensus disorder prediction 656 676 - -
Mtr1g0566 676 ProSiteProfiles Protein kinase domain profile. 369 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0566 676 MobiDBLite consensus disorder prediction 269 283 - -
Mtr1g0566 676 SUPERFAMILY Protein kinase-like (PK-like) 354 639 IPR011009 -
Mtr1g0566 676 Gene3D Phosphorylase Kinase; domain 1 330 444 - -
Mtr1g0566 676 ProSiteProfiles Gnk2-homologous domain profile. 141 254 IPR002902 -
Mtr1g0566 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Mtr1g0566 676 Gene3D Transferase(Phosphotransferase) domain 1 446 647 - -
Mtr1g0566 676 MobiDBLite consensus disorder prediction 659 676 - -
Mtr1g0566 676 Gene3D - 144 254 IPR038408 -
Mtr1g0566 676 Gene3D - 30 133 IPR038408 -
Mtr1g0566 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 653 - -
Mtr1g0566 676 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Mtr1g0566 676 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Mtr1g0566 676 Pfam Protein tyrosine and serine/threonine kinase 373 638 IPR001245 GO:0004672|GO:0006468
Mtr1g0566 676 MobiDBLite consensus disorder prediction 285 300 - -
Mtr1g0566 676 SMART serkin_6 369 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0566 676 CDD STKc_IRAK 375 640 - -
Mtr1g0566 676 Pfam Salt stress response/antifungal 33 132 IPR002902 -
Mtr1g0566 676 Pfam Salt stress response/antifungal 156 251 IPR002902 -
Mtr1g0566 676 MobiDBLite consensus disorder prediction 258 300 - -
Mtr1g0566 676 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0566 Mtr-Chr1 6559283 6564643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0566 38 650 Receptor kinase-like Gene Family AT4G21410 49.128 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g0566 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0566 - - mtr:MTR_0341s0020 1113.98