Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0560 ATGGGATTACAAAACGGTGGTGGGTGTAGCAGATCTTGGGAAGAAGATATTTATTGGACCCATTTTCAATTCATTCATTTCACTCAATTTCTTCGCTCCAATGATTTTGATCAACAATTGGCTCTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGCTGCCTGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGCTAACAAGTAGAGACGGTACATTTTACTTCACGCAAGGGTGGGAACAATTTGTTAAAGACCACTCTTTGAAAGAGAACGACTTCCTGTTCTTTAAGTACAATGGTGAATCGTTGTTTGAGGTTTTAATATTTGATGGCAAGAGTTTCTGTGAGAAGGCGGCAGCTTATTTTGTTCGGAAATGTGGGCATGCTGAGGCTGCCGCCCAAACTGAACAAGGGGGCGGATGTTCTAGCAAGGGAAGAGAGACAAACAATTCTGTGGATGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACATGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCATTTGCCGTACCTTCTGAAACTACTAATGGAAAGACTTCTAATGCTGCTGTTGAATCTGCCACCCCTGAGCAATTAATGTCTGATGCAGCAGTCACTGAGACTGAGCCAACAGCTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCTGTTTATGCTGTTCCGTCTGTCCCGAGTAAGAAGAGAGGAAGACCACCACGAACGTCTAATTCTCAAGAGAAAGCTCTTAATTGGGTGACTGATGCTGGACCTGCCCCAGCGTCTCCAAAGGGTTCTCCAAAGACGCAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGATGAGATTGAAAAAACTCTTCAGGTGGCTCAGGCAGCGTGTACCGAGGAAAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCTAACAAGTGGATACTAAACCACCTTGCTCCTTCGTCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGCAACAATGGAGGACTTACTGGTGGGTGGAAGTATTTTGCGCTCGACAACAACCTTGAAGAGTTTGATGTGTGTTTGTTCAAACCAGCTGGTCATTTGCATGACATATTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCAGGAAAGAAGAGGGGATTGAGTTCTACAGGAAAGAAGAGGGGAGTCAAGAGAACACTGACCAGTGCTGCCCAAACAGAACTTGAGGCCATTGAAGGAGCTGAGACAGACGACCAGGGACTGCAACAAGCTGATGATGATGAACTCTTATCTCAAATACGGGCCAAAAGGAACATAGTAAAATCATCCAAGTATCTCAAGGATTATGTGATACCAAAGAAGAAAACCAGCTTAGATCTAGAAGGCACCTCTGCTAGCTGA 1530 0.4346 MGLQNGGGCSRSWEEDIYWTHFQFIHFTQFLRSNDFDQQLALPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWEQFVKDHSLKENDFLFFKYNGESLFEVLIFDGKSFCEKAAAYFVRKCGHAEAAAQTEQGGGCSSKGRETNNSVDEVNTPSNGVDEGVSHEKSLHLNSIRVPFAVPSETTNGKTSNAAVESATPEQLMSDAAVTETEPTAVPSQTTGKRTRRPVYAVPSVPSKKRGRPPRTSNSQEKALNWVTDAGPAPASPKGSPKTQELYTSNRRPVTKDEIEKTLQVAQAACTEESLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVHSPGKKRGLSSTGKKRGVKRTLTSAAQTELEAIEGAETDDQGLQQADDDELLSQIRAKRNIVKSSKYLKDYVIPKKKTSLDLEGTSAS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0560 509 CDD B3_DNA 317 410 IPR003340 GO:0003677
Mtr1g0560 509 SUPERFAMILY DNA-binding pseudobarrel domain 314 396 IPR015300 -
Mtr1g0560 509 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Mtr1g0560 509 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 161 - -
Mtr1g0560 509 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 268 420 - -
Mtr1g0560 509 Gene3D - 292 414 IPR015300 -
Mtr1g0560 509 MobiDBLite consensus disorder prediction 250 264 - -
Mtr1g0560 509 CDD B3_DNA 26 116 IPR003340 GO:0003677
Mtr1g0560 509 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Mtr1g0560 509 MobiDBLite consensus disorder prediction 189 234 - -
Mtr1g0560 509 MobiDBLite consensus disorder prediction 142 170 - -
Mtr1g0560 509 MobiDBLite consensus disorder prediction 189 290 - -
Mtr1g0560 509 Pfam B3 DNA binding domain 27 116 IPR003340 GO:0003677
Mtr1g0560 509 Pfam B3 DNA binding domain 316 396 IPR003340 GO:0003677
Mtr1g0560 509 MobiDBLite consensus disorder prediction 139 173 - -
Mtr1g0560 509 SMART B3_2 314 407 IPR003340 GO:0003677
Mtr1g0560 509 SMART B3_2 27 118 IPR003340 GO:0003677
Mtr1g0560 509 MobiDBLite consensus disorder prediction 422 442 - -
Mtr1g0560 509 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 268 420 IPR044837 -
Mtr1g0560 509 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 161 IPR044837 -
Mtr1g0560 509 Gene3D - 20 121 IPR015300 -
Mtr1g0560 509 SUPERFAMILY DNA-binding pseudobarrel domain 22 116 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0560 Mtr-Chr1 6495655 6500537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0560 4 410 REM Transcription Factor Family AT4G33280 34.679 4.69e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0560 B3 3.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0560 - - mtr:MTR_1g021500 944.11