Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0559 ATGGGAAGTGTGAACCGATCATGGGAGGAAGACATTTACTGGACCCATTTTCAGTTCATCCATTTCACTCAATTTCTTCGCAACACTGATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGAAGTTGCCTGAAAATGTGAACCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAAAGAGGACACTGTTTACTTCACAAACGGTTGGCAAGGATTTGTGAATGATCACTCTTTGAAAGAGAGTGATTTCCTTTTTTTCAAATACAATGGAGAATCATTGTTTGAAGTTTTAATATTTCATGGTGAGACCTTATGCGAGAAAGCGGGCTCCTATTTTGTAAGAAAGTGTGGACAAGGTCATACTGAGCAAGAGGGCAACAAGGCAAAGGTTGCAAAGAATTCTGTTGAAGAAGTCAACACTGCTTCTAATGGCGGTGTTGAATGCGGTTCTGAGAAATTTCGGAAGCTTGACACTATAAGAACACCATTAGCTGTACCTTTCGAAAATACCAATGAGAAGACTTCTAATGCTGGTGTTGAATCTGCTTCCCCCGAGCATGTCATGGCTGATGCAGTCACTATTGCGGTTCCCTCCCAAACAGCCGGCAAAAAGACCAAGAAGCCTGTTAACGAAGTTACGCCTGGCCAGCCTAAGAAGCGGGGAAGACCAGCAAAATCAGCTACTTCTGGCGAGAGAGCAATTGTTGATTGGGTGGCTTTTAGCAAGGAAAATTCAGGGAGCAAAGAGAAAGATGCTGATGATCGTGAAATTGAAGGTGGAAGCTGA 819 0.4212 MGSVNRSWEEDIYWTHFQFIHFTQFLRNTDFQQQLALPKTFSDNLKKKLPENVNLKGPSGVVWNIGLTTKEDTVYFTNGWQGFVNDHSLKESDFLFFKYNGESLFEVLIFHGETLCEKAGSYFVRKCGQGHTEQEGNKAKVAKNSVEEVNTASNGGVECGSEKFRKLDTIRTPLAVPFENTNEKTSNAGVESASPEHVMADAVTIAVPSQTAGKKTKKPVNEVTPGQPKKRGRPAKSATSGERAIVDWVAFSKENSGSKEKDADDREIEGGS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0559 272 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Mtr1g0559 272 MobiDBLite consensus disorder prediction 254 272 - -
Mtr1g0559 272 CDD B3_DNA 21 110 IPR003340 GO:0003677
Mtr1g0559 272 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 5 238 - -
Mtr1g0559 272 MobiDBLite consensus disorder prediction 208 272 - -
Mtr1g0559 272 Gene3D - 15 116 IPR015300 -
Mtr1g0559 272 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 238 IPR044837 -
Mtr1g0559 272 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Mtr1g0559 272 Pfam B3 DNA binding domain 23 110 IPR003340 GO:0003677
Mtr1g0559 272 SMART B3_2 22 113 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0559 Mtr-Chr1 6483968 6488760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0559 8 130 REM Transcription Factor Family AT4G33280 55.645 8.00e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0559 B3 3.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0559 - - mtr:MTR_1g021440 341.273