Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0558 ATGGGAGGAAGAGATGATGGACAAAACTGGGATGGAAGCAGATCTTGGGAAGAAGATATTTACTGGACCCATTTCCAGTTCATCCATTTCACCCAATTTCTTCAAACTACCACCAATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGAAGTTGCCAGAAAATGTGACCCTTAAGGGTCCTAGTGGAGCTGTGTGGGATATTGGGTTGACAACTAGAGATAATACTGTTTACTTCGTGGGCGGTTGGGAGCGATTCGTGAAAGATCATTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAATCTTTGATGGAGATAACTTTTGTGAGAAGGCAACTTCTTATTTTGTCAGAAAATGTGGACATGCTCAAACTGAAGAAGGGGGTAGCAAGGTAAAGAACACAAACACATCTGTTGAAGAAGTCAATACTGCTTCTAATGGTGGCGTTGACTGTGGTTCACCTGAGACATTTCGGGTTCGGCGTCTTGACAGTATAAGAACACCATTAGCTGTACCTGTCAAAACTACTGATAAAATGACATTAAATGCTTTTTTTGAATCTGCTTCCCCTAAGGAACTCCCCGTCTACTTTCCCAAACAACCAACCGGCCAAAGGACCAAGAAGCCAGCTAATGAAGTTACACCTGGCCAGACTAAGAAGCGAGGAAGACCGCCAAAAGAAGGTAATTCTCGTGAAGGAGCACTTGATTTGAGGGCTTCTAACAAGGAACACTCAGAGGCGGCACAGTCAAGGTTATCGTCAGCAAAGGATGAGAAAAAGTTAGCCCAGTCATTTACCTCAACTTTTCCATATTTTGTTAAAATAATCAAAACGTTCAATGTCGATGGTCCACGTATTCTGAATGTACCCCATCAATTTTCCATAGCACATCTTCCAAACGGCAAGATAAAGATTATTCTTCGTAATTTGAAGGGAGAACAGTGGACTGCTAATTCTGTTCCTAGAAGTAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGTCTTTTGTTCGTGCCAATAACATAAAGCTTGGAGATGTCTGCGTTTTCGAACTTATAAATGACTGTGAATTACGTGTTCGCGTTGCTGAGGTCGACGAAGATGGGCTAGTCTCCGAGGTTCAAAAGGAAGGTATTGATCATCAAAATGGCAGTTGTGAAACTTAA 1224 0.4101 MGGRDDGQNWDGSRSWEEDIYWTHFQFIHFTQFLQTTTNFQQQLALPKTFSDNLKKKLPENVTLKGPSGAVWDIGLTTRDNTVYFVGGWERFVKDHSLKENDFLVFKYNGESLFEVLIFDGDNFCEKATSYFVRKCGHAQTEEGGSKVKNTNTSVEEVNTASNGGVDCGSPETFRVRRLDSIRTPLAVPVKTTDKMTLNAFFESASPKELPVYFPKQPTGQRTKKPANEVTPGQTKKRGRPPKEGNSREGALDLRASNKEHSEAAQSRLSSAKDEKKLAQSFTSTFPYFVKIIKTFNVDGPRILNVPHQFSIAHLPNGKIKIILRNLKGEQWTANSVPRSRVHTSHTLCGGWMSFVRANNIKLGDVCVFELINDCELRVRVAEVDEDGLVSEVQKEGIDHQNGSCET* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0558 407 ProSiteProfiles B3 DNA-binding domain profile. 289 385 IPR003340 GO:0003677
Mtr1g0558 407 MobiDBLite consensus disorder prediction 212 274 - -
Mtr1g0558 407 Gene3D - 23 125 IPR015300 -
Mtr1g0558 407 CDD B3_DNA 287 381 IPR003340 GO:0003677
Mtr1g0558 407 CDD B3_DNA 30 120 IPR003340 GO:0003677
Mtr1g0558 407 Pfam B3 DNA binding domain 289 380 IPR003340 GO:0003677
Mtr1g0558 407 Pfam B3 DNA binding domain 31 120 IPR003340 GO:0003677
Mtr1g0558 407 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 13 392 - -
Mtr1g0558 407 SUPERFAMILY DNA-binding pseudobarrel domain 26 121 IPR015300 -
Mtr1g0558 407 SMART B3_2 289 385 IPR003340 GO:0003677
Mtr1g0558 407 SMART B3_2 30 122 IPR003340 GO:0003677
Mtr1g0558 407 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 392 IPR044837 -
Mtr1g0558 407 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Mtr1g0558 407 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Mtr1g0558 407 MobiDBLite consensus disorder prediction 236 274 - -
Mtr1g0558 407 Gene3D - 270 386 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0558 Mtr-Chr1 6454289 6480727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0558 8 373 REM Transcription Factor Family AT4G33280 32.990 1.18e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0558 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0558 - - mtr:MTR_1g021440 788.489