Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0557 ATGGAAGATAGCAGCAGATCTTTGGAAGAAAACATTTACTGGAACCATTTCCAGTTCATCCATTTCGCTCAGTTTCTCCACTCCACTGATTTTGAACAGCAACTTGCACTTCCTAGAACATTCTCAGACAATTTGAAGAAGAAGCTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGAATGGAATGTAGGGCTGCAAACTAGAGATAATACTGTTTACTTCGTGGACGGTTGGCATCAGTTTGCAAGAGATCATTCTCTGAAAGAGAATGATTTCGCAGTCTTTAAGTACAATGGCGAATCATTGTTCAATGTGTTAATCTTTCAAGGAGAAAGCTTTTGTGAGAAAGCGGCTTCCTATTTTGTTGGTCTCAGGGAGAAGGAAACAAACAAGTCTGTTGAAGAAGTCAACACTGTTCTTAATGCTGGTGTTGAATCTGCTTCCCCTGAGCAGTTCACGGCTAATGCAGTCACTATAGTGCTTCCCTCCCAATCAACCGGCAAAAGGACCAAGCAGCCTGTTAATGAGGTCACACCTGTCCAGACTAAGAAGCGAGGAAGACCACCGAAAAAAGCTAATTGTTCTCTTGAGAGAGAAGTGCATGATTATGATTTGGTGGCTTGCAACAAGGAACACTCAGAGGCATCCATCAGTGGGAAGGAAGATGAGAAAAAGATAGCCCACTTATTTACCTCCTCTTTTCCATATTTTGTTATGATAATGAAATCCTGCAATATCAGTGGTTCACGTACTCTGAGAATCCCATGTCATTTCTCTGCTACACATCTCCCTGACTGCAAGACAGAAGTTACGCTTCGCAATGCAAGAGGTGAATGTTGGAATGTGAACTCCATCCCAGTGGGAGCAACACACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGGTATCAATCTTGGCGACACAATAATTTTTGAGCTCGTTTCTAATTTTGTGATGAAGGTTTATATATCTGGGGTTGGAAAAGAAGGTCTTGACTATCAAAATTATAAACGAGCTCAAAAATGTGCTTGTTTGTGA 1053 0.4179 MEDSSRSLEENIYWNHFQFIHFAQFLHSTDFEQQLALPRTFSDNLKKKLPENVTLKGPSGVEWNVGLQTRDNTVYFVDGWHQFARDHSLKENDFAVFKYNGESLFNVLIFQGESFCEKAASYFVGLREKETNKSVEEVNTVLNAGVESASPEQFTANAVTIVLPSQSTGKRTKQPVNEVTPVQTKKRGRPPKKANCSLEREVHDYDLVACNKEHSEASISGKEDEKKIAHLFTSSFPYFVMIMKSCNISGSRTLRIPCHFSATHLPDCKTEVTLRNARGECWNVNSIPVGATHTFCGGWMAFVRDNGINLGDTIIFELVSNFVMKVYISGVGKEGLDYQNYKRAQKCACL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0557 350 CDD B3_DNA 21 110 IPR003340 GO:0003677
Mtr1g0557 350 SUPERFAMILY DNA-binding pseudobarrel domain 18 111 IPR015300 -
Mtr1g0557 350 CDD B3_DNA 237 328 IPR003340 GO:0003677
Mtr1g0557 350 Gene3D - 15 116 IPR015300 -
Mtr1g0557 350 ProSiteProfiles B3 DNA-binding domain profile. 239 332 IPR003340 GO:0003677
Mtr1g0557 350 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 345 IPR044837 -
Mtr1g0557 350 Gene3D - 219 331 IPR015300 -
Mtr1g0557 350 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Mtr1g0557 350 Pfam B3 DNA binding domain 24 111 IPR003340 GO:0003677
Mtr1g0557 350 Pfam B3 DNA binding domain 239 327 IPR003340 GO:0003677
Mtr1g0557 350 SUPERFAMILY DNA-binding pseudobarrel domain 232 330 IPR015300 -
Mtr1g0557 350 SMART B3_2 238 332 IPR003340 GO:0003677
Mtr1g0557 350 SMART B3_2 22 113 IPR003340 GO:0003677
Mtr1g0557 350 MobiDBLite consensus disorder prediction 167 193 - -
Mtr1g0557 350 MobiDBLite consensus disorder prediction 167 181 - -
Mtr1g0557 350 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 5 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0557 Mtr-Chr1 6447255 6449934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0557 9 317 REM Transcription Factor Family AT4G33280 29.132 1.07e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0557 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0557 - - mtr:MTR_1g021435 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0557 1 6447255 6449934 Mtr1g0557 1 6447255 6449934 ECH