Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0556 ATGGGAGGAACACAAAACAGTAGCAGCAGGTCTTGGGAGGAAGACATTTACTGGACCCATTTCCAATTCATCCGTTTCACCCAATTTCTTCAACCCACCCATTTGGAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAACAAGTTGCCAGCAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGGATATAGGGCTGACAACTAGAGATGATACAATTTACTCCACGGATGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAACAGAATGATTTCCTTGTCTTCAAGTACAATGGTGAATCACTGTTTGAGGTTTTAATCTTTCATGGAGAAAGCTTCTGCGAGAAAGCAGCTTCTTATTTTATTCTTGAACGTGGACAAGCTCATACTGGACAAAGGGGTCGCAAGGCAAAGGACACAAACACTTCTGTTGAAGAAGTCAATACTCCTTCTAATGGCAGTGTTGAATGCGGTTTGCCTGAAAAATCATGGGAGGAAGACATTTACTGGACCCATTTCCAATTCATCCATTTCACCCAATTTCTTCGCGCCGATTTTGAACAGCAACTTGCACTTCCTAAAACATTCTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAGAGATGATATTGTTTACTTTGTGGACGGTTGGAAACGATTCATTAAAGATCACTCTTTGAAACAGAATGATTTCCTTGTCTTTAAGTACAACGGTAAATCACTCTTTGAGGTTTTAATCTTTGATGGAGATAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGGAATGCTCAAATCGAACAAGGGGGTAGAAAGGCAAAAGACACAAATAAATCTGTTTCCCCTGAGCAGTTCTTGGCTGATGCGGTTCCCTCCCAAACAAACGGCAAAAGGACCAAGAAGAGGCCTGTTAATGAAGTTACGCCTCTCCAGACTAAGCGAGGAAGACGACCAAAAGCAGAGGCAGCACTGTCAAAGTTATCATCATCGCATGCTGAGAAAAAGATAGCCGAATCATTTACCTCCTCTTTTCCTTATTTTGTTAAAATGATCAAAACGTTCAATGTCGATGGTCCACGTATTCTGAATGTACCCCACCAATTCTCAAAGGCACATCTTCCAAACCGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACAATGGACTGTTAATTCTGTTCCAACAACTAGAGTGAATACAGATCACACTCTATGTGGAGGATGGGTGAATTTTGTTCGTGGCAACAACATAAAAGTTGGAGATGTCTGCATTTTCGAACTTATACACGAGTGTGAATTACGTGTTCGCGTCGCTGAAGTTGGAAAAGATGATTCTAGGTTGGAAAACTAG 1437 0.4064 MGGTQNSSSRSWEEDIYWTHFQFIRFTQFLQPTHLEQQLALPKTFSDNLKNKLPANVTLKGPSGVVWDIGLTTRDDTIYSTDGWQQFVKDHSLKQNDFLVFKYNGESLFEVLIFHGESFCEKAASYFILERGQAHTGQRGRKAKDTNTSVEEVNTPSNGSVECGLPEKSWEEDIYWTHFQFIHFTQFLRADFEQQLALPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTRDDIVYFVDGWKRFIKDHSLKQNDFLVFKYNGKSLFEVLIFDGDSFCEKAASYFVGKCGNAQIEQGGRKAKDTNKSVSPEQFLADAVPSQTNGKRTKKRPVNEVTPLQTKRGRRPKAEAALSKLSSSHAEKKIAESFTSSFPYFVKMIKTFNVDGPRILNVPHQFSKAHLPNRKIKIILHNLKGEQWTVNSVPTTRVNTDHTLCGGWVNFVRGNNIKVGDVCIFELIHECELRVRVAEVGKDDSRLEN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0556 478 MobiDBLite consensus disorder prediction 306 325 - -
Mtr1g0556 478 SUPERFAMILY DNA-binding pseudobarrel domain 180 273 IPR015300 -
Mtr1g0556 478 CDD B3_DNA 25 114 IPR003340 GO:0003677
Mtr1g0556 478 SUPERFAMILY DNA-binding pseudobarrel domain 367 466 IPR015300 -
Mtr1g0556 478 Gene3D - 354 470 IPR015300 -
Mtr1g0556 478 CDD B3_DNA 372 466 IPR003340 GO:0003677
Mtr1g0556 478 Gene3D - 19 120 IPR015300 -
Mtr1g0556 478 Gene3D - 177 277 IPR015300 -
Mtr1g0556 478 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 305 474 - -
Mtr1g0556 478 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 167 304 - -
Mtr1g0556 478 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 8 145 - -
Mtr1g0556 478 SUPERFAMILY DNA-binding pseudobarrel domain 22 115 IPR015300 -
Mtr1g0556 478 ProSiteProfiles B3 DNA-binding domain profile. 181 274 IPR003340 GO:0003677
Mtr1g0556 478 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Mtr1g0556 478 ProSiteProfiles B3 DNA-binding domain profile. 374 470 IPR003340 GO:0003677
Mtr1g0556 478 MobiDBLite consensus disorder prediction 295 347 - -
Mtr1g0556 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 145 IPR044837 -
Mtr1g0556 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 305 474 IPR044837 -
Mtr1g0556 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 167 304 IPR044837 -
Mtr1g0556 478 CDD B3_DNA 183 272 IPR003340 GO:0003677
Mtr1g0556 478 Pfam B3 DNA binding domain 27 114 IPR003340 GO:0003677
Mtr1g0556 478 Pfam B3 DNA binding domain 375 465 IPR003340 GO:0003677
Mtr1g0556 478 Pfam B3 DNA binding domain 193 272 IPR003340 GO:0003677
Mtr1g0556 478 SMART B3_2 26 117 IPR003340 GO:0003677
Mtr1g0556 478 SMART B3_2 374 470 IPR003340 GO:0003677
Mtr1g0556 478 SMART B3_2 184 274 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0556 Mtr-Chr1 6434810 6441486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0556 170 332 REM Transcription Factor Family AT4G33280 46.951 7.47e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0556 B3 1.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0556 - - mtr:MTR_1g021360 979.163