Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0554 ATGTTTCAAATGGGAAGTGGAAGAAGATCACGGGAGGAAGAGATTTACTGGAACCATTTTCAGTTCATCCATTTCACCCTATTTCTGAGCACCACCCATTTTCAACAACAACTTGCACTTCCTAAAACATTCTCAGACAACTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTATGGAATATAGGGCTGACAACTAGAAATGATACTGTGTACTTCATGGACGGTTGGCAGCGGTTTGTGAAAGATCATTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAATCTTTAATGGAGAAAGCTTATGTGAGAAAGCAGCTTCTTATTTTGTTCTAGAATGTGGACAAGCTCATACTGAACAAGGGGGCAACAAAGGAAAGAATTCAAACAATTTTTTTGAAGAAGTCAATACTCCTTCCTAA 471 0.3758 MFQMGSGRRSREEEIYWNHFQFIHFTLFLSTTHFQQQLALPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTRNDTVYFMDGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFNGESLCEKAASYFVLECGQAHTEQGGNKGKNSNNFFEEVNTPS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0554 156 Gene3D - 18 119 IPR015300 -
Mtr1g0554 156 MobiDBLite consensus disorder prediction 137 156 - -
Mtr1g0554 156 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Mtr1g0554 156 CDD B3_DNA 24 114 IPR003340 GO:0003677
Mtr1g0554 156 Pfam B3 DNA binding domain 30 114 IPR003340 GO:0003677
Mtr1g0554 156 MobiDBLite consensus disorder prediction 136 156 - -
Mtr1g0554 156 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 9 145 - -
Mtr1g0554 156 SMART B3_2 25 116 IPR003340 GO:0003677
Mtr1g0554 156 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Mtr1g0554 156 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 145 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0554 Mtr-Chr1 6429012 6430661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0554 12 138 REM Transcription Factor Family AT4G33280 53.906 3.44e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0554 B3 8.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0554 - - mtr:MTR_1g021350 271.937