Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0553 ATGATGGGAGAAGGAAGAACACAAAACAGCAAATCATGGGAGGAAGAGATTTATTGGTCCCATTTTCAATTCATCCATTTTACCATTTTTCTTCAAAGCACCACCGATTTTCAACAACAACTTGCCCTTCCTAAAATATTCTCGGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACACTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGAATACTAGAGGTGAATCTGTTTATTTCGTGGACGGTTGGCGACGTTTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCACTCTTTGAGGTTTTAATCTTTAATGGAGAAAGCTTCTGTGAAAAAGCAGCTTCTTATTTTGTTCTAGAATGTGGACAAGCTCATGCTGAACAAGGGGGTAACAAAGGAAAGAATTCAAACAAATCTGTTGAAGAAGTCAATACTACTAACGGCAGTGTTGAATGTGCTTCACCTGAGAAATTTCGGAGTCTTGACAGTATAAGAACACCTTTAGCTCTAACTTTTGAAACTACTAATGGAAAAACTTTTAATGCTGGTTTTAAATCTGCTTCCCCTGAGAAGCCTGTTATAGAAGTTACACCTGTCCAGACTAAGAAGCGAGCAAGAACACCGAAAGAAGCTAATTCTTGGGAGAGCGCGTGTAACAAGGAACACTCAGAGGCAGCACTGTCAAAGTTATCAAGAAAATTATCAAGAAATGATGAGGAAAAGATAGTACAATCATTTTCTTCCTCTGTTCCATATTTTGTTAAAATAATCAAAACGTTTCATGTCAGTGGTTCATGTGTTATGAATATACCCCGTCAATTTTCTATGGAACATCTTAAAAAAGGCAGGATAAAGATTATTCTTCATAATATGAAGGGAGAATGTTGGATTGTCAATTCTGTTCCTACAGCTAAAGTGCCAAAAAGTCACACTCTATGTGCAGGATGGATGTCTTTTGTTCATGCCAATAACATTAAAATTGGAGATGTCTGCATTTTCGAACTTATAAATGACTGTGAATTACGTGTTCGCATCGCTGGGGTTGGAAAAGAAGGGCTAGACTGCCAGGTTGGAAAGGAAGGTCTTGACCATCAAAATGAGCATATGAAACTTAATAGCATCTAG 1161 0.3764 MMGEGRTQNSKSWEEEIYWSHFQFIHFTIFLQSTTDFQQQLALPKIFSDNLKKKLPENVTLKGPSGVVWNIGLNTRGESVYFVDGWRRFVKDHSLKENDFLVFKYNGESLFEVLIFNGESFCEKAASYFVLECGQAHAEQGGNKGKNSNKSVEEVNTTNGSVECASPEKFRSLDSIRTPLALTFETTNGKTFNAGFKSASPEKPVIEVTPVQTKKRARTPKEANSWESACNKEHSEAALSKLSRKLSRNDEEKIVQSFSSSVPYFVKIIKTFHVSGSCVMNIPRQFSMEHLKKGRIKIILHNMKGECWIVNSVPTAKVPKSHTLCAGWMSFVHANNIKIGDVCIFELINDCELRVRIAGVGKEGLDCQVGKEGLDHQNEHMKLNSI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0553 386 ProSiteProfiles B3 DNA-binding domain profile. 265 361 IPR003340 GO:0003677
Mtr1g0553 386 MobiDBLite consensus disorder prediction 141 160 - -
Mtr1g0553 386 SUPERFAMILY DNA-binding pseudobarrel domain 260 358 IPR015300 -
Mtr1g0553 386 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 372 IPR044837 -
Mtr1g0553 386 MobiDBLite consensus disorder prediction 139 160 - -
Mtr1g0553 386 CDD B3_DNA 27 117 IPR003340 GO:0003677
Mtr1g0553 386 SMART B3_2 265 361 IPR003340 GO:0003677
Mtr1g0553 386 SMART B3_2 26 119 IPR003340 GO:0003677
Mtr1g0553 386 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Mtr1g0553 386 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 9 372 - -
Mtr1g0553 386 SUPERFAMILY DNA-binding pseudobarrel domain 22 117 IPR015300 -
Mtr1g0553 386 CDD B3_DNA 263 357 IPR003340 GO:0003677
Mtr1g0553 386 Gene3D - 244 360 IPR015300 -
Mtr1g0553 386 Pfam B3 DNA binding domain 27 116 IPR003340 GO:0003677
Mtr1g0553 386 Pfam B3 DNA binding domain 265 356 IPR003340 GO:0003677
Mtr1g0553 386 Gene3D - 20 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0553 Mtr-Chr1 6423164 6427390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0553 4 349 REM Transcription Factor Family AT4G33280 30.952 2.93e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0553 B3 7.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0553 - - mtr:MTR_1g021440 513.457