Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0552 ATGGGAGGAGCAGGTGGAAGCAGCAAATCTTGGGAGAAAGAGATTTACTGGACCCATTTTCAGTTCATTCATTTCATCCAATTTCTTCAAACCACCACCGATTTTCAACAACAACTTGCCCTTCCGAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGGCAACGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATGTTGGGCTGACAGCTAGAGATGATACCATTTACTTCACGAATGGATGGCAAAGATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGGGAGTCACTCTTTGAAGTTTTAATCTTTCATGGAGATAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGACAAGCTCATACTGAACAAGTGTGTAACAAGGGAAAAAGCTCCAATAATTCTGTTGAAGAAGTCAGTACTCCTTCTAATGGCAGTGTTGAATGCAGTTTGCCTGAAAAATCATGGGAGGAAGACATTTACTGGACCCATTTTCAGTTCATCCATTTCACCCAACTTCTTCCCGAAGATTTTAAGCAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAATAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCCGGTGGTGTTGCATGGAAAATAGGGCTCATAACTAGAGACGATACTGTTTACTTCCTGAACGGTTGGCAACGATTCGTGAACGATCACTCTTTGAAAGATAATGATTTCCTTGTCTTTAATTACAATGGTGAGTCACACTTTGATGTTTTGATCTTTGATGGAGAAAGCTTCTGTGAGAAAGAAGCTTCTTATTTTGTCGGAAAATGCAGCCATACTCAAACTGAACTAGGGGGTAGCAAAGCAAACGAAACAAACAATTCTATTGAAGAAGTCAATACTGCTTCTTCTGATGGTGGTGTTGAATGTGGTTTATATGAGAAATTTCAGGATCTTAACAATATAGGAACACCATTAGCTGTACCTGTTGAAACTACCAATGAAAAGACTTTTAATGCTGGTGTTGAATCTGATTCCCCTGAGCTGCTCATAGCTGATACAGTCACTAAGACCACAGCTATACAGTTTCCCTACCAACCAACCGGCAAAAGGAGCAAGAGGAGAAGATCATCGACATCAGCTAATTGTTGTTGGAGAGCACTTGACCGGGTGGCTTATAACAAGCAACACTCAGTCACTATAGCGGTTCCCTCCCAAACAACCGGCCAAAAGACCAAGAAGCCTGTTAATGAAGTTACACCTGGCCGGAGTATGAAGCGGGGAAGACAAGCAAAAACAGCTACTTCTGGTGAGAGATCAATTGATTGGGTGGCTTGTAACAAGGAAAACTCAGAGGCAGCCAACCTGAATAGAAGTGGGAAGGCAGATGGCCATGATATTCTCAGTGGAGCTTCACTGTCAAAGTTATCACCACATGCTGAGAAAGAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATGAAAACATTCAATGTTGAACGTCCACGTATTCTGAATATTCCATATGAATTTTCGAAGGATCATCTTCCAAACTGCAAGATAAAGATTACTCTTCATAATTTGAAGGGAGAACAGTGGACCGTCAATTCTGTTCCTAGAACTAGATTGCATGCAAGTCACATTCTATGCGGAGGATGGTTGAATTTTGTTCGTGGCAATAGCCTAAAGATTGGAGATGTCTGTATTTTCGAACTTATAGGTGAGTGTGAATTACGTGTTCGCATCAATGAGGTTGGAAAAGATGGGTTAGACTCCCAGGTTGGAAAACTAGCTTGTAGACTTGATGTCGCTAGCCATAAGACTTCCAGATTTATGCCGAAGAAACATAAAATCAGCTCAAAGTGCTGTGCGGAAGTTGATCTATTAGATAAAAAGTTGTCAGAGATTTGCCAAGAAGCTGCTTTATCCTCTGAGTTAAAGAAATCCGTTAGAGCTTCAAATACTTCAAAGAAGGCAGGGCTTTCCCCCAAGTCAAAAGCTTCCCATAAAAAGCCGGCTGTTCCGAGGAAACACCGCATTGAAGATGCACTAAGCTCCCAGGCTAATGATAGTTTGAAAATGTTGTTTGCACTCGACGAACAAAGAGTAGCTGAAGCTTTCACTTCCCCATTTCCTTATTTTGTGAAAATCATGAAGAAGTTCAATGTTTGTGGATCATACACTTTGAAAATCCCATGCCAGTTCTCTACTGCACATCTCCCTGCTCGCAATACAGAAGTTACGCTTCGCAATTCAAGAGGAAAATGTTGGACTGTGAACTCCGTCCCATATGTTCAAGGGGAAACGACTATTCACACATTTTGTGGGGGATGGAATGCCTTTGTTCGTGATAATGACATCAATTTTGGTGATACTTGTATTTTTGAGCTCGTTTCTGATTATATCATGCAAGTTCGTATATCTGGGGTTGGAAAGGAAGGTCTTGATCATCAAAACGGGAATGTGAAACTTACTAGCTAG 2529 0.4061 MGGAGGSSKSWEKEIYWTHFQFIHFIQFLQTTTDFQQQLALPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQVCNKGKSSNNSVEEVSTPSNGSVECSLPEKSWEEDIYWTHFQFIHFTQLLPEDFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVGKCSHTQTELGGSKANETNNSIEEVNTASSDGGVECGLYEKFQDLNNIGTPLAVPVETTNEKTFNAGVESDSPELLIADTVTKTTAIQFPYQPTGKRSKRRRSSTSANCCWRALDRVAYNKQHSVTIAVPSQTTGQKTKKPVNEVTPGRSMKRGRQAKTATSGERSIDWVACNKENSEAANLNRSGKADGHDILSGASLSKLSPHAEKEIAQSFTSSFPYFVKIMKTFNVERPRILNIPYEFSKDHLPNCKIKITLHNLKGEQWTVNSVPRTRLHASHILCGGWLNFVRGNSLKIGDVCIFELIGECELRVRINEVGKDGLDSQVGKLACRLDVASHKTSRFMPKKHKISSKCCAEVDLLDKKLSEICQEAALSSELKKSVRASNTSKKAGLSPKSKASHKKPAVPRKHRIEDALSSQANDSLKMLFALDEQRVAEAFTSPFPYFVKIMKKFNVCGSYTLKIPCQFSTAHLPARNTEVTLRNSRGKCWTVNSVPYVQGETTIHTFCGGWNAFVRDNDINFGDTCIFELVSDYIMQVRISGVGKEGLDHQNGNVKLTS* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0552 842 CDD B3_DNA 184 272 IPR003340 GO:0003677
Mtr1g0552 842 SUPERFAMILY DNA-binding pseudobarrel domain 499 599 IPR015300 -
Mtr1g0552 842 CDD B3_DNA 25 114 IPR003340 GO:0003677
Mtr1g0552 842 CDD B3_DNA 504 598 IPR003340 GO:0003677
Mtr1g0552 842 Gene3D - 488 601 IPR015300 -
Mtr1g0552 842 Gene3D - 715 826 IPR015300 -
Mtr1g0552 842 ProSiteProfiles B3 DNA-binding domain profile. 506 602 IPR003340 GO:0003677
Mtr1g0552 842 SUPERFAMILY DNA-binding pseudobarrel domain 723 825 IPR015300 -
Mtr1g0552 842 ProSiteProfiles B3 DNA-binding domain profile. 730 827 IPR003340 GO:0003677
Mtr1g0552 842 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 630 838 IPR044837 -
Mtr1g0552 842 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 167 616 IPR044837 -
Mtr1g0552 842 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 148 IPR044837 -
Mtr1g0552 842 Pfam B3 DNA binding domain 506 598 IPR003340 GO:0003677
Mtr1g0552 842 Pfam B3 DNA binding domain 192 272 IPR003340 GO:0003677
Mtr1g0552 842 Pfam B3 DNA binding domain 33 113 IPR003340 GO:0003677
Mtr1g0552 842 Pfam B3 DNA binding domain 730 816 IPR003340 GO:0003677
Mtr1g0552 842 MobiDBLite consensus disorder prediction 669 693 - -
Mtr1g0552 842 SMART B3_2 506 602 IPR003340 GO:0003677
Mtr1g0552 842 SMART B3_2 184 274 IPR003340 GO:0003677
Mtr1g0552 842 SMART B3_2 25 117 IPR003340 GO:0003677
Mtr1g0552 842 SMART B3_2 730 829 IPR003340 GO:0003677
Mtr1g0552 842 CDD B3_DNA 728 823 IPR003340 GO:0003677
Mtr1g0552 842 Gene3D - 178 277 IPR015300 -
Mtr1g0552 842 Gene3D - 18 120 IPR015300 -
Mtr1g0552 842 SUPERFAMILY DNA-binding pseudobarrel domain 183 272 IPR015300 -
Mtr1g0552 842 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Mtr1g0552 842 ProSiteProfiles B3 DNA-binding domain profile. 181 274 IPR003340 GO:0003677
Mtr1g0552 842 MobiDBLite consensus disorder prediction 413 445 - -
Mtr1g0552 842 MobiDBLite consensus disorder prediction 413 428 - -
Mtr1g0552 842 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 8 148 - -
Mtr1g0552 842 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 167 616 - -
Mtr1g0552 842 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 630 838 - -
Mtr1g0552 842 SUPERFAMILY DNA-binding pseudobarrel domain 22 115 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0552 Mtr-Chr1 6413308 6420781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0552 170 305 REM Transcription Factor Family AT4G33280 49.635 1.75e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0552 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0552 - - mtr:MTR_1g021320 1684.46