Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0549 ATGGGTCGTGAGTGTAAGGGAAAGTTAAATGTGAGAAAACCTCACTTCTATCACCTCTTTAACCCTTCTTCAACCTCTCAATCTCTGAGAGTTCCAGATGGTTTTGTCCATCAAATGGAGGGCGCGACATGCGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGATTAGTTGAGCAGGACAATCATCTGTTCTTCCATCATGGATGGTCAACATTTGTGGGAGATCATCATTTACAATATGGCGACCTTTTGGTTTTCAGATACGAGGGTCACTTGCATTTCACCGTGCAAGTATTTGGTGAGAATGCATGCGAGAAAGAAGCTGCATTTCATTCTGAGTGCAATCTAAATTCATTAACCTTCAATAATATTGAAGGACAGAAAAGTGATGCCGAGATGATTTCTTCTTTGGATGTTGTTGGAGATGTTCAGAAGAAAATGAGGTGCGACGCCATTGAGAACCAGGAGCCTGAGTTGGCTATTGCTGGTAAAAATCAATCCAATTATGAGTTGGTTAGACCAATCAGTATGATCAGAGAAACAGAAGAAACCTGCAAAGAATGTTCAGCTAGTGCTGTCCATGTTCCTTTTCAAACAGGAAATAGTAATGAAGTTGAAGATGCAGCAATCCTGTATAGAAGTGGGAAGGAAGATGACCACAATATTCTCAGCGGAGCTTCACTATCAAAGTTATCAGCACATGATGAGAAAAAGATAGCCCAATCATTTACGTCCTCTTTTCCATATTTTGTTAAAATAATCAAAACCTTCAATGTCAGTGGTTCGTATACTCTGAATGTTCCATATCAATTTTCGATGTCACATTTTCCAAATTGCAAGACAAAGATTATTCTTTATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAGCATAAAAGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCGCATTGCTGAGGTTGGAAAAGATGGGTTAGACTGCCAGGTTGGAAAACTAGCTTGTAGTATGCTTAGTGAACGACATGATGTTGCTAGCCATAATACTTCCAGATATATGCCAAAGAAACCTAAAGTTAGCTCAAAGTGCAGAACGAAGGTTGATCTATCAGATAAAAAGTTGTCAAAGATTGGTCAAGAACCTGTTTTAGCCATTGAATTCAAGAAGTCAGGTAGAGCTTCAACTACTTCGAAGAAGATGGGGCTTTCCCCCAAGTCAAAAGCTTCCCATAAAAAGACGGCTGTACCGAGGAAACATCGTGTTGAAGATGAACTAAGTTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAACAAAGAGTAGCTGAAGCTTTTACTTCCCCATTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCTTATCAGTTCTCTGCTGCACATCTCCCCGCCTACAAAACAGAAGTTACGCTTCGCAATTCAAGAGGCCAGTGTTGGATTGTAAACTCCGTTCCAGATGCAAAAGGAAGAACAATTCACACCTTTTGTGGGGGATGGATAGCCTTTGTTCGTGATAATGACATCAATTTTGGTGATACTTGCATTTTCGAGCTCGTTTCTCATTATGTGATGCAGGTTCATATATCCGGGGTTGGAAAGGAAGGTCTTGACCATCAAATTGGGCATGCGAAACTTAATAACATGTAG 1791 0.4015 MGRECKGKLNVRKPHFYHLFNPSSTSQSLRVPDGFVHQMEGATCGLVSLTGPSGNTWQVRLVEQDNHLFFHHGWSTFVGDHHLQYGDLLVFRYEGHLHFTVQVFGENACEKEAAFHSECNLNSLTFNNIEGQKSDAEMISSLDVVGDVQKKMRCDAIENQEPELAIAGKNQSNYELVRPISMIRETEETCKECSASAVHVPFQTGNSNEVEDAAILYRSGKEDDHNILSGASLSKLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNVPYQFSMSHFPNCKTKIILYNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIRECELRVRIAEVGKDGLDCQVGKLACSMLSERHDVASHNTSRYMPKKPKVSSKCRTKVDLSDKKLSKIGQEPVLAIEFKKSGRASTTSKKMGLSPKSKASHKKTAVPRKHRVEDELSSQAKAGLRMLFALDEQRVAEAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGQCWIVNSVPDAKGRTIHTFCGGWIAFVRDNDINFGDTCIFELVSHYVMQVHISGVGKEGLDHQIGHAKLNNM* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0549 596 Gene3D - 8 109 IPR015300 -
Mtr1g0549 596 ProSiteProfiles B3 DNA-binding domain profile. 255 351 IPR003340 GO:0003677
Mtr1g0549 596 SUPERFAMILY DNA-binding pseudobarrel domain 477 578 IPR015300 -
Mtr1g0549 596 Gene3D - 469 579 IPR015300 -
Mtr1g0549 596 Gene3D - 236 351 IPR015300 -
Mtr1g0549 596 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 458 - -
Mtr1g0549 596 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 459 593 - -
Mtr1g0549 596 CDD B3_DNA 14 104 IPR003340 GO:0003677
Mtr1g0549 596 CDD B3_DNA 253 347 IPR003340 GO:0003677
Mtr1g0549 596 SUPERFAMILY DNA-binding pseudobarrel domain 248 348 IPR015300 -
Mtr1g0549 596 SMART B3_2 255 351 IPR003340 GO:0003677
Mtr1g0549 596 SMART B3_2 16 107 IPR003340 GO:0003677
Mtr1g0549 596 SMART B3_2 484 582 IPR003340 GO:0003677
Mtr1g0549 596 Pfam B3 DNA binding domain 255 347 IPR003340 GO:0003677
Mtr1g0549 596 Pfam B3 DNA binding domain 484 569 IPR003340 GO:0003677
Mtr1g0549 596 Pfam B3 DNA binding domain 21 104 IPR003340 GO:0003677
Mtr1g0549 596 ProSiteProfiles B3 DNA-binding domain profile. 484 580 IPR003340 GO:0003677
Mtr1g0549 596 MobiDBLite consensus disorder prediction 423 453 - -
Mtr1g0549 596 CDD B3_DNA 482 576 IPR003340 GO:0003677
Mtr1g0549 596 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Mtr1g0549 596 PANTHER B3 DOMAIN-CONTAINING 1 458 - -
Mtr1g0549 596 PANTHER B3 DOMAIN-CONTAINING 459 593 - -
Mtr1g0549 596 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0549 Mtr-Chr1 6392262 6397079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0549 13 347 B3 DNA Binding Superfamily AT3G18990 24.507 5.38e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0549 B3 4.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0549 - - gmx:100814386 894.419