Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0547 ATGAGTAGCACTTCAAGCGAACACTATGGTGATCACAAAACTCACATATTGAGAGTCATGAATAGCGCTTTAAGCGAAGATGATGGCGATCACAAAACAGGCATATTGAGTGGTATGAGTAGCCCTTCAAGCGGCGATGATGATCGCAAAAGGCAGTCAATACTGTCAGCTGATCAAGAAACTGATGAAGGAGATACCACTGGAGGAGAAGGAGGAGAAGGTGGTCTAAAGAAAGGTCCATGGACAGCGGCAGAGGATGAAATCTTGGTAGCTCATGTTCAAAAATATGGTGAGGGAAACTGGAATTCAGTCCGGAAATGTACCGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCAAATCATTTGAGACCTGATCTCAGAAAGGGTGCAATTACTGCTGAAGAAGAACGCCGAATCATTGAGTTGCATCATAAGATGGGAAATAAATGGGCTCAAATGGCTGCACTGTTGCCTGGACGTACAGATAATGAGATAAAGAACTTTTGGAACACAAGATGCAAGAAACGGGGTCGGGCAAACTTACCAATCTACCCTGAAGATTTATCATCTGAATGTCTGCTGAATCAAGAAAATGCTGACATGTTGACAAATGAAGCCAGCCAGCATGATGAAGCAGAGAACAAAGTACCTGAAGTGATATTTAAAGATTACAAACTCCGCCCTGATATTTTACCACCATGTTTTGATAAGCTTCTAGCTGGCTTGTTATTGCGTCCCTCTAAGCGCCCTTGGAAGTCCGATATGAATTTGTACAGTTATAGCAATAATGCTGCTGCCCCAGCAGCATTTGATCAGCTCAGAAAATATCCTATGCCATCTCCTTCGTCTCCTCCATGGGAGGATATTAATGAACCACATAGCTACAATCAGTTTAATGAATATGATAACCCTATGGTCGGTATTCACATGGCACCAAAAACCTCTTCTTTTGAGCCCATATATGGGTTCATGAAGACTGAGCCCCCTTCACTCCAATATTCACAGACTCAACATCGTAGCTATATGATTCCATATCCTCAAGTTGAGCCTGTTCAGTCAGTTCCAACTTCTCTAGAGAGGAGTCATTTTCTTCCATCCAATGAAGCAAATCTTAGCACACAATGGGATGAGTCAGATGATCAGTATGATGGTTTATTTCCGTCCTTTGACTATAATAACAATAATCATATGAACACGTGCTCAACTGACGGGCACCACTCAGCTGAAACTACTCAGGGTCATGATATTATTAACCATGCTGCATTTAATCAGATCCCAGATTACTTTTCTTCTGAGAGAGATGATTTGAGGAGAAAAATATTTGCGCATCCAGATGCTGCGCCTGTGGTTGATGACTTCGCTTGGTATTATAAAATAGAATAA 1392 0.4224 MSSTSSEHYGDHKTHILRVMNSALSEDDGDHKTGILSGMSSPSSGDDDRKRQSILSADQETDEGDTTGGEGGEGGLKKGPWTAAEDEILVAHVQKYGEGNWNSVRKCTGLARCGKSCRLRWANHLRPDLRKGAITAEEERRIIELHHKMGNKWAQMAALLPGRTDNEIKNFWNTRCKKRGRANLPIYPEDLSSECLLNQENADMLTNEASQHDEAENKVPEVIFKDYKLRPDILPPCFDKLLAGLLLRPSKRPWKSDMNLYSYSNNAAAPAAFDQLRKYPMPSPSSPPWEDINEPHSYNQFNEYDNPMVGIHMAPKTSSFEPIYGFMKTEPPSLQYSQTQHRSYMIPYPQVEPVQSVPTSLERSHFLPSNEANLSTQWDESDDQYDGLFPSFDYNNNNHMNTCSTDGHHSAETTQGHDIINHAAFNQIPDYFSSERDDLRRKIFAHPDAAPVVDDFAWYYKIE* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0547 463 CDD SANT 80 125 IPR001005 -
Mtr1g0547 463 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 49 436 - -
Mtr1g0547 463 SMART sant 77 127 IPR001005 -
Mtr1g0547 463 SMART sant 130 178 IPR001005 -
Mtr1g0547 463 Gene3D - 77 130 - -
Mtr1g0547 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 129 IPR017930 -
Mtr1g0547 463 CDD SANT 135 174 IPR001005 -
Mtr1g0547 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 180 IPR017930 -
Mtr1g0547 463 ProSiteProfiles Myb-like domain profile. 126 176 IPR001005 -
Mtr1g0547 463 SUPERFAMILY Homeodomain-like 75 172 IPR009057 -
Mtr1g0547 463 Pfam Myb-like DNA-binding domain 81 140 - -
Mtr1g0547 463 Gene3D - 135 179 - -
Mtr1g0547 463 MobiDBLite consensus disorder prediction 44 58 - -
Mtr1g0547 463 MobiDBLite consensus disorder prediction 20 79 - -
Mtr1g0547 463 ProSiteProfiles Myb-like domain profile. 73 125 IPR001005 -
Mtr1g0547 463 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 49 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0547 Mtr-Chr1 6376802 6380328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0547 64 192 MYB Transcription Factor Family AT4G26930 70.543 3.86e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g0547 Myb_DNA-bind_6 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0547 K09422 - gmx:100800658 291.582