Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0538 ATGTTGTCACAAAAAGTACTATTGTGGTCTTTGATATTTCTAGTGTGCCACTTTGCAATATCATGCAAAGCCAACCAACAAAGTGAATACCTCTACAGGTTTATTCGATCAAAAATGTTTCAACAAAACCCTTCACATGTAGAATCTTATTCAAGTACTATTGTTGATGAACATGTTTCAAAGGTACATGTCAATGTTGAACAACACTTAAGGTCGAGGAAATCTGATAAGGTGAAGAGTTTGCCTGGACAACCAAAAGGGGTGAATTTTGATCAATATGCTGGCTATATAACTGTGGATGCCAAAGCTAGGAGAAAACTTTTCTACTACTTTGTTGAATCTCCTTCAAATTCTTCCACGAAGCCTCTTGTTCTATGGCTAAATGGAGGACCTGGATGCTCCTCATTTGGATATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTCAACAGTGATGGAACCACACTTTCCTTTATTAAAGATGCATGGAACGTTGTGGCAAATGTTATCTTCCTAGAGTCTCCGGTAGGAGTTGGATTTTCTTATTCAAAAAAACCGTTAAATCAAACTAATATTGGTGACAAAAACACAGCCAGAGATTCTTACATTTTTCTTCTAAACTGGCTTGAGAGATTTCCACAGTATAAGATTCGAGATTTCTTCATAACTGGTGAAAGTTATGCTGGCCATTATGTCCCTCAACTAGCTCACCTTATTCTATCAAATAACAAGAAAAGGAAAAATCACAAAATGATCAATTTGAAAGGGATTGCGGTTGGGAACGGTTGGATAGATGACAATTTCTGTACAAAGGGAATGTATGATTATTTCTGGATGCATGCTCTTAACTCTGACCAAACACATAAAGGAATTGAAAAACATTGTGACTTTAGGAAGTTCAATGTAACAAATGAATGTGTCGGATATGAAAATATAGCAGATGATGAGCTTGGAAATATTGACGTTTACAACATATATGCCCCAGTTTGTAATTCATCTGCAACAAAATATGGTGCTAGTTACTCTGTCAGTAATGTCGACCCTTGTGCTGAAGATTATACCACTACCTATTTAAATCTCCCAGAAGTTCAAAAGGCTCTTCATGTTAAACGCACAAAATGGTCTCCTTGCAGTGATCTGAGTTGGACAGATAGTCCAGCAAGTATTCTGCCAACTATAAATGGATTAATATCAAGTGGTATAAGCATTTGGATGTACAGTGGAGATATAGATGGACGTGTTCCCATAATCTCAACAAAGTATTCAATAAATTCCTTAAAACTACATGTACGTACAGCATGGCGTCCATGGTACACTGGAAAAGAGGTTGGAGGGTATGTGATTGGTTACAAAGGGCTCACACTAATCACTGTAAGAGGAGCTGGGCACATGGTTCCAACTGACCAACCATACCGAGCACTAACCGTGATCTCATCTTTCCTTCTTGGACAACTTCCTCCTCAATTTTTTGCAATCTCATGCAAAGCCAATCAACAAAGTGAATACCTCTACAAGTTTATCAAATCAAGAAGGTATCAACAAAAGCCTTCACATGTAGAAGCTTATTCAAGTACAATTGTTAATGAACATGTTTCAAAGGTACATGTTAACGTTGAACAACATTTAAGGTCGAGGAAAGCTTATAAGGTGAAGAGTTTGCCTGGACAACCAAAAGGGGTGAATTTTGATCAATATGCTGGCTATATAACTGTGGATGCCAAAGCTAGGAGAAAACTTTTCTACTACTTTGTTGAATCTCCTTCAAATTCTTCCACAAAGCCTCTCGTTCTATGGCTAAATGGAGGACCTGGATGCTCTTCATTGGGATATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTCAACAGTGATGGAACCACACTTTCCCTTAATAAAGATGCATGGAACGTTGTGGCAAATGTTATCTTTTTAGAGTCTCCAGCAGGAGTTGGATTTTCCTATTCAAACAATTCTTTAGATTACTCTAACGTTGGTGACAATCGCACAGCCATAGATTCTTACATTTTTCTTCTAAATTGGCTTGAGAGATTTCCACAGTATAAGACTCGAGATTTCTTCATAGCTGGTGAAAGTTATGCTGGCCATTATGTTCCTCAGCTAGCTCATCTTATTCTATCAAAAAATAAGAAAAGGAAAAATCACAATGTGATAAATTTGAAAGGGATCGCGGTTGGGAACGGTTTGATAGATGACAAATTGTCTACAAAGGGAATGTATGACTACTACTGGACGCATGCTCTAATCTCTGACGAAACTCATGCAGGAATTGAAAAAAATTGTGGTGACTTTAGGAATGTAACAAATTTAAGGGAATGCTTCTTATATGAATTTAAAGCGGATGATGAGCTTGTAGATATTGACGTTTACAACATATATGCCCCAGTTTGTAATTCATCTGCAACAAAAAATGGAGCTAGTTACTTTGTCAGTAATATCGACCCTTGTGCTGAAGATTATACCGCTGCCTATTTAAATCTCCCAGAAGTTCAAAAGGCTCTTCATGTTAAACCCATAAAATGGTCTCATTGCAGTGGTGTGGGTTGGACAGATAGTCCAACTAGTATTCTACCAACTATAAATCAGTTAATATCAAGTGGTATAAGCATATGGATATACAGTGGTGATTTAGATGGGCGTGTTCCCATAACCTCAACAAAGTATTCAATAAATTCCTTAAAACTGCCTGTGCATACAGCATGGCGTCCATGGTACACTGGAAAAGAGGTTGGAGGGTATGTGATTGGTTACAAAGGGCTCACACTAGTCACTGTAAGAGGAGCTGGACACATGGTTCCAACTGACCAACCATACCGAGCACTAACCATGATCTCATCTTTCCTTCTTGGACAACTTCCTCCTCAATTAAAATCTTAA 2895 0.3803 MLSQKVLLWSLIFLVCHFAISCKANQQSEYLYRFIRSKMFQQNPSHVESYSSTIVDEHVSKVHVNVEQHLRSRKSDKVKSLPGQPKGVNFDQYAGYITVDAKARRKLFYYFVESPSNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGTTLSFIKDAWNVVANVIFLESPVGVGFSYSKKPLNQTNIGDKNTARDSYIFLLNWLERFPQYKIRDFFITGESYAGHYVPQLAHLILSNNKKRKNHKMINLKGIAVGNGWIDDNFCTKGMYDYFWMHALNSDQTHKGIEKHCDFRKFNVTNECVGYENIADDELGNIDVYNIYAPVCNSSATKYGASYSVSNVDPCAEDYTTTYLNLPEVQKALHVKRTKWSPCSDLSWTDSPASILPTINGLISSGISIWMYSGDIDGRVPIISTKYSINSLKLHVRTAWRPWYTGKEVGGYVIGYKGLTLITVRGAGHMVPTDQPYRALTVISSFLLGQLPPQFFAISCKANQQSEYLYKFIKSRRYQQKPSHVEAYSSTIVNEHVSKVHVNVEQHLRSRKAYKVKSLPGQPKGVNFDQYAGYITVDAKARRKLFYYFVESPSNSSTKPLVLWLNGGPGCSSLGYGAMQELGPFRVNSDGTTLSLNKDAWNVVANVIFLESPAGVGFSYSNNSLDYSNVGDNRTAIDSYIFLLNWLERFPQYKTRDFFIAGESYAGHYVPQLAHLILSKNKKRKNHNVINLKGIAVGNGLIDDKLSTKGMYDYYWTHALISDETHAGIEKNCGDFRNVTNLRECFLYEFKADDELVDIDVYNIYAPVCNSSATKNGASYFVSNIDPCAEDYTAAYLNLPEVQKALHVKPIKWSHCSGVGWTDSPTSILPTINQLISSGISIWIYSGDLDGRVPITSTKYSINSLKLPVHTAWRPWYTGKEVGGYVIGYKGLTLVTVRGAGHMVPTDQPYRALTMISSFLLGQLPPQLKS* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0538 964 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Mtr1g0538 964 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
Mtr1g0538 964 Gene3D - 822 853 - -
Mtr1g0538 964 Gene3D - 349 380 - -
Mtr1g0538 964 Gene3D - 862 956 - -
Mtr1g0538 964 Gene3D - 389 483 - -
Mtr1g0538 964 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 485 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 500 958 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 Pfam Serine carboxypeptidase 554 954 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 Pfam Serine carboxypeptidase 82 481 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 Gene3D alpha/beta hydrolase 72 332 IPR029058 -
Mtr1g0538 964 Gene3D alpha/beta hydrolase 542 815 IPR029058 -
Mtr1g0538 964 ProSitePatterns Serine carboxypeptidases, histidine active site. 926 943 IPR033124 GO:0004185
Mtr1g0538 964 SUPERFAMILY alpha/beta-Hydrolases 546 958 IPR029058 -
Mtr1g0538 964 ProSitePatterns Serine carboxypeptidases, serine active site. 694 701 IPR018202 GO:0004185
Mtr1g0538 964 PANTHER CARBOXYPEPTIDASE 500 958 - -
Mtr1g0538 964 PANTHER CARBOXYPEPTIDASE 27 485 - -
Mtr1g0538 964 SUPERFAMILY alpha/beta-Hydrolases 78 484 IPR029058 -
Mtr1g0538 964 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Mtr1g0538 964 PRINTS Carboxypeptidase C serine protease (S10) family signature 631 643 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 PRINTS Carboxypeptidase C serine protease (S10) family signature 644 654 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 PRINTS Carboxypeptidase C serine protease (S10) family signature 680 705 IPR001563 GO:0004185|GO:0006508
Mtr1g0538 964 PRINTS Carboxypeptidase C serine protease (S10) family signature 926 939 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0538 Mtr-Chr1 6263679 6274475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0538 830 957 Calmodulin-binding Proteins AT2G22960 30.827 1.02e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0538 1 6263679 6274475 Mtr1g0538 1 6263679 6274475 ECH